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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCCGCACTCGAAGAAGCTCAGCTTCGTTTCGACATTTTGAAGTCCAAATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctctctctctctctctctctctctctgaatttgtaaaatctgtatttcgttttctcccttaattgttagtttttatgataataagagattagaatattgcggtgtttcatgaatattttggttttgcggtgcag

Basic information

species Glycine max
transcript GLYMA07G36610.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713259|gb|BW684346.1|BW684346
EST:     ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG                         GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: gi|6070813|gb|AW100200.1|AW100200
EST:     ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG                         GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: gi|213589192|gb|DB957724.1|DB957724
EST:     ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG                         GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: gi|19348464|gb|BM892996.1|BM892996
EST:     ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG                         GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
EST: gi|213603198|gb|DB960461.1|DB960461
EST:     ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCG                         GGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCATCGATATCTTCGGCCATCATCCTCAAATCTTTGCTCGCTCACCCGgttcctctct ... tgcggtgcagGGAGAGTGAACTTGATTGGGGAGCATATTGATTATGAAGGTTATTCGGTGC