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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCAGGGGAGCTCTTTGCCTGTTGACTCAGTCATGAACTGGTATCTTGCTCTTGAGTCTGGCAATTTTTGGTTCCTTGCTCAGGTCTATAACCGTGAGgtatgtgatatgtataaacaaacccttttgtggtgcttttctattgaaaatttatatctaccttgctagctacaaatataaaatcagttgtttgaatttcaatggaacacagtgggttgtgttttctcacaagttacatttttgctgttggtggtgtag

Basic information

species Glycine max
transcript GLYMA07G36360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36360.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0009g02700.t01 (Vitis vinifera), 5'ss of exon 1
CAAGCAGGGGAGCTCTTTGCCTGTTGACTCAGTCATGAACTGGTATCTTGCTCTTGAGTCTGGCAATTTTTGGTTCCTTGCTCAGGTCTATAACCGTGAGgtatgtgatatgtataaacaaacccttttgtgg------tgcttttctattgaaaatttatatctacct-----tgctagctacaa---atataaaatcagttgtttgaatttcaatggaacacagtgggttgtgttttctcacaa--gttacatttttgctgtt-ggtggtgtag
|   ||| |||||||  | || || || ||  |||||   |||||||||||||||||| ||||||  |||||||||| ||| ||||| || || |||||||||||   | |   |        ||   | |        ||  |||| | |  ||  |   |  | | |     |  |  ||||||   | |  || ||| || | |  |||    ||   | |  |||||| | | || ||| ||  |     |||||||||||  |  |     
CCCACAGAGGAGCTCAGTTCCAGTGGATTCCATCATGTCTTGGTATCTTGCTCTTGAGACTGGCAGGTTTTGGTTCCCTGCACAGGTTTACAATCGTGAGgtatggactgtaactgcttgtttccagctataaattgtctgtctttcaacttcaatctcccacttccttaaggctcatgtctacaacctaaacgaagtcacttctgtttattcttttg---ctctctgggtttt-tcttttcataatggaagtgtttttgctgtttagcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662236|gb|BI699607.1|BI699607
EST:     CTCTTGAGTCTGGCAATTTTTGGTTCCTTGCTCAGGTCTATAACCGTGAG                         AATGGTCATATTGGATTCTTGTTATCT
genomic: CTCTTGAGTCTGGCAATTTTTGGTTCCTTGCTCAGGTCTATAACCGTGAGgtatgtgata ... ggtggtgtagAATGGTCATATTGGATTCTTGTTATCT