Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193567157|gb|FK526910.1|FK526910EST: CCGCCATGGAGAACACCGGTATTCTCTGCGTCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST:
gi|209698021|gb|BW675639.1|BW675639EST: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST:
gi|209705060|gb|BW653309.1|BW653309EST: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST:
gi|209727406|gb|BW669859.1|BW669859EST: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCCATGGGTCCCACGAGTACCACCAGGAAACCCTCGACAACCTCCGCGCCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgccccaccagatctgtttttcatattctctcccctttttgtttgatttgtgtttatatttatattctcatcgccgattttgttttctttgtttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA