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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACGTATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgctgctactgatattattataattatttaattattactttctagattcaaatacttgctttgcgtttgggattgctctgaggaattttatgc...

Basic information

species Glycine max
transcript GLYMA07G35010.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 1
lower sequence: AC233979.1_FGT009 (Zea mays), 5'ss of exon 1
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACGTATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgc----tgctactgatattattataattattta-attattactttctagattcaaatacttgctttgcgtttgggattgctctgaggaattttatgc
||||||  || || | ||| || |||||  ||||||||||| | ||||| ||||||||||| ||||||||  |||||||||| || |||||||||||||||| ||| |      | | ||  ||  |||   ||||||||  | |   | || ||  |   | |   |   || || | |   ||   |    |  ||||     
ATTCCCTTTCGAGGAGAGACGGCATTGATCTGAAGAAAGAGTCTTATCTTCGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGACTTAAAGTgtaagtatatattataccacaaattctatgtcaattatttttacttgcatttcctgaaaatacaacatccattcgcctgtaatatcattagctgttattt-----

upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 10
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACGTATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagt----ttgctgctactgatattattataattattta-attattactttctagattcaaatacttgctttgcgtttgggattgctctgaggaattttatgc
|||||  ||| || |  || || |||||  ||||||||||| | ||||| ||||||||||| ||||||||  |||||||||| || ||||| |||||||||| |||    ||  | | ||  ||  |||   ||||||||  | |  |  || ||  |   | |   |   || || |   | |||| | |    || |||||  
ATTCCGTATCGAGGAGGGACGGCATTGATCTGAAGAAAGAGTCTTATCTTCGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatattttataccacaaattctatgtcaattatttttacttctgtttcctgaaaatacaatatccattcgcct---gcattgttattttcaaatttat--

upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G19600.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACGTATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgctgctactgatattattataattatttaat-tattactttctagattcaaatacttgctttgcgtttgggattgctctgaggaattttatgc
|||| || |||||    ||| | |||||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||||||||||| | ||||||| ||| |     | ||||  |   |||      || ||  ||| | || |  |||  | |||||  |  | | ||||  | |  |     | |||     
ATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTgtaagtataa-atttctgacctatatatttcagctttatacattgcattttccatttgattacttcttgcgagcttggtctaggacatgctagtttctcct

upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0125g00270.t01 (Vitis vinifera), 5'ss of exon 1
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACGTATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgctgctactgatattattata-attatttaattattactttctagattcaaatacttgctttgcgtttgggattgc-tctgaggaattttatgc
||||||||||||||| |||||| |||||||||| ||||||||| ||| | || || ||||||||||| ||||||||||||||||||||||| |||||||||| |||    | | |   || || || |  ||||| |     ||     || | |  |   | ||  ||   ||    | |||| ||     |  |||    
ATTCCCCATCAAGAAGAGATGGCATTGACTTGAGGAAAGAGACATATTTCCGAAAATCATACTGCACTTTCTTGCAGGATTTAGGCATGAGGCTTAAAGTgtaagtcctatacaa--aatgttgttctggattatgtctcctttttgaactggttgtaggcaattctttcaggtaattggttgcatcatttcaggtttgcat