1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TATAGCAATGGCAGAACAAAACCAAAACCAAACAACTGAAGCTGGAAGGCACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccaccccaattgcattcctttgataaaaagaaaaagaaaaaaaatctttttctcttttgggtttttgataaaatggttatgttgaaaaaaaaatctattttttgggggtttttgataaaatggttatgctgtgtttag
species | Glycine max |
transcript | GLYMA07G33780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAAEST: gi|8403758|gb|BE059325.1|BE059325
genomic: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
EST: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAAEST: gi|208203707|gb|GE004790.1|GE004790
genomic: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
EST: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAAEST: gi|26048143|gb|CA784719.1|CA784719
genomic: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
EST: CACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAAEST: gi|15661667|gb|BI699038.1|BI699038
genomic: CACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
EST: CAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAAEST: gi|13312671|gb|BG406322.1|BG406322
genomic: CAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
EST: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAAEST: gi|151395162|gb|EV265033.1|EV265033
genomic: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
EST: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAAEST: gi|15000825|gb|BI321639.1|BI321639
genomic: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
EST: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAG TATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
genomic: ACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccacccc ... ctgtgtttagTATATTCTGGAGACAAGTGTCTACCCAAGAGAACCTGAATCCATGAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAGCAATGGCAGAACAAAACCAAAACCAAACAACTGAAGCTGGAAGGCACCAAGAGGTTGGTCACAAGAGCCTTCTCCAGAGTGATGCTCTTTACCAGgtaccaccccaattgcattcctttgataaaaagaaaaagaaaaaaaatctttttctcttttgggtttttgataaaatggttatgttgaaaaaaaaatctattttttgggggtttttgataaaatggttatgctgtgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG