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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAACAGGATACCTGCTCCGAGGCTCTTGAAGTTGACTCCTCTTGATTCGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGGgtaagttcaattttccgttgttgttgttgttgtttgttcattatgatttcagttcttggtatgtccatgtagctacttgtgtatgtcaattttggcaatt...

Basic information

species Glycine max
transcript GLYMA07G33490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G33490.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0063g00480.t01 (Vitis vinifera), 5'ss of exon 1
GGGGAACAGGATACCTGCTCCGAGGCTCTTGAAGTTGACTCCTCTTGATTCGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGGgtaagttcaat--tttccgttgttgttgttgttgtttgttcattatgatttcagttcttggtatgtccatgtagctacttgtgtatgtcaattttggcaatt
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GGGAAATAAGATCCCAGCTCCCAGACTGTTGAAGCTGACTCCTGTTGATTCACATATGGCTGGGGTGGATAATAAATTTCACGGTGGCCAATTTTCATGGgtaagttgattcatgtcttccatatttcatgctatgtcttgcttgatccatacatttctatcttggtcatttaaat-ttggctgataagagcttacatgat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342644|gb|CO983610.1|CO983610
EST:     CGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGG                         GTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAG
genomic: CGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGGgtaagttcaa ... tgtctttcagGTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAG
EST: gi|193350118|gb|FK317780.1|FK317780
EST:     CGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGG                         GTCACTGAGAATGGTAAACAAGAACGCCACCTTGTCGCAACTGTGG-CAAG
genomic: CGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGGgtaagttcaa ... tgtctttcagGTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAG
EST: gi|6726213|gb|AW310567.1|AW310567
EST:     CGCATTTGGCTGGCGCGACCAATAAGTTTCACGGTGGCCATTTCTCGTGG                         GTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAG
genomic: CGCATTTGGCTGGCGCGAACAATAAGTTTCACGGTGGCCATTTCTCGTGGgtaagttcaa ... tgtctttcagGTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAG