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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGAGCAATTAAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattccatttcgaatctctctctctctcacacaattttcattcagaagcaattttgttttgttctatgccttttcgatttcactgttattatgtcgctcggagaagcgcgattagaatcgcgtttaggttagttaggttactgtctcaattacgaagagtgttgtactaagctcgaaattcggttgcag

Basic information

species Glycine max
transcript GLYMA07G32960.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32960.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g66960.1 (Oryza sativa), 5'ss of exon 1
TCGGAGCAATTAAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattccatttcgaatctctctctctctcacacaattttcattcagaagcaattttgttttgttctatgccttttcgatttcactgttattatgtcgctcggagaagcgcgattagaatcgcgtttaggttagttaggttactgtctcaattacgaagagtgttgtactaagctcgaaattcggttgcag
 ||||||  ||  |  |  | || |||||| | || || |||||||| |||||| | ||||||||||||||| | ||| | |||| |||||||||| ||||| |          |    |  ||| ||| ||   |  |     |    || | ||  | | ||  |   |            |  |     |  ||   |                                                                                           
GCGGAGCGGTTCGGGGCGAGGGAGTGCGAGGAGCTGGGGTTCACCGGTCTCGCCCTCTGCTCCGACTGCAACGCCCTCGCGGAGTTCGTCAAGGACCAAGgtatgggggtacctgtggattcctc-ctcccatgtagctgctgct----agtatttgcgatctgaaccgggaacgcgtaggagcctttcggatgcgttttttctt---------------------------------------------------------------------------------------

upper sequence: GLYMA07G32960.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G109429_T02 (Zea mays), 5'ss of exon 1
TCGGAGCAATTAAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattccatttcgaatctctctctctctcacacaattttcattcagaagcaattttgttttgttcta--tgccttttcgatttca-ctgttattatgtcgctcggagaagcgcgattagaatcgcgtttaggttagttaggttactgtctcaattacgaagagtgttgtactaagctcgaaattcggttgcag
   ||||   |  |  |  | || |||||| | || || |||||||| |||||  | ||||||||||||||| | |||||||||| |||||||||| |||||     |   |     || |||   | | |  |||     || || |  ||  |  || |  || ||   ||  ||| |||| ||| | |  |  | || ||                                                                                            
GGCGAGCGGCTCGGGGCGAGGGAGTGCGAGGACCTGGGGTTCACCGGCCTCGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccggatc---gtccctccggcgcgcg-acaccacgcactcggt-gcgctgctgctgagtgctgattggatttccgatctcaaccgggaacacgtagccg------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183243|gb|HO028456.1|HO028456
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298172471|gb|HO019511.1|HO019511
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGGGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|193558801|gb|FK510798.1|FK510798
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298172644|gb|HO019684.1|HO019684
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298197208|gb|HO041951.1|HO041951
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAAACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298177783|gb|HO027336.1|HO027336
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|298188030|gb|HO031987.1|HO031987
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAACACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
EST: gi|208340857|gb|GE137419.1|GE137419
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCA