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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGGAGCTCTGCTCGCCGGTGCTGAAGAGGGAGGCTGTCCTCCTCCGGCCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgccattcattttttttcttaaattatcacag

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 1
GCCCGGAGCTCTGCTCGCCGG--TGCTGAAGAGGGAGGCTGTCCTCCTCCGGCCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgccattcattttttttcttaa-attatcacag
     | ||||   ||| |||  ||   |   |  ||  ||   | ||||||||     | ||| || | || ||||| ||||| || || ||||||||||||||||||||||||| | ||||||||| | |   ||    |    | | || ||  ||||||    || ||||| |  |      || || |||
--AGAGCGCTCCAGTCGTCGGCATGACCACCGGAAAGCGTGAGATTCTCCGGCCGACTATGGCCTCCACGTCGTCGCCCGCCGAAGGGAGCGATTCCGCCGGgtgaggtccgtttccttcgttctgacccggtcgacgacccgttttgagtcacccgactaatt---tttattttctgacccgttgttttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720817|gb|BW677391.1|BW677391
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|120534376|gb|EH262509.1|EH262509
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213600485|gb|DB966194.1|DB966194
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|7041761|gb|AW471655.1|AW471655
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213615350|gb|DB963544.1|DB963544
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20449842|gb|BQ253966.1|BQ253966
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20448694|gb|BQ252818.1|BQ252818
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGGTGAG                     
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCC----G-Ggtgaggtccg ... attatc
EST: gi|120534368|gb|EH262501.1|EH262501
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213589339|gb|DB961672.1|DB961672
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20448800|gb|BQ252924.1|BQ252924
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213587747|gb|DB955609.1|DB955609
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|209721814|gb|BW680013.1|BW680013
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|120531507|gb|EH259640.1|EH259640
EST:     CCATGCCTCGCCGCCGCCTCCTAGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|20812093|gb|BQ296571.1|BQ296571
EST:     CCATGCCTCGCCGCCGCCTCCTCTCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|15285164|gb|BI469055.1|BI469055
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|11412623|gb|BF424634.1|BF424634
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213587892|gb|DB959716.1|DB959716
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|15337762|gb|BI498418.1|BI498418
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|26058933|gb|CA801847.1|CA801847
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|16104872|gb|BI892612.1|BI892612
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213593376|gb|DB973569.1|DB973569
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|23059611|gb|BU578385.1|BU578385
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213602207|gb|DB958467.1|DB958467
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|24137046|gb|BU927556.1|BU927556
EST:     CCATGCCTCGCCGTCTCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|213590584|gb|DB973329.1|DB973329
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|15287351|gb|BI471242.1|BI471242
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|208041294|gb|GD838579.1|GD838579
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT
EST: gi|10847076|gb|BF069843.1|BF069843
EST:     CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGG                         AGAAGCAAAGGTTGCTCCGGCGGGGTTCTTCGACAAGTACCCGGCTCTGGT
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTCTTTGACAAGTACCCGGCTCTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCCGGAGCTCTGCTCGCCGGTGCTGAAGAGGGAGGCTGTCCTCCTCCGGCCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGTAGTGATTCCGCCGGgtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgccattcattttttttcttaaattatcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC