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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTTTCCAAACGCACGCAGCGAGTTAGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctctaaaccctaattgcttccctgtttggatttttgtgtgtttatcgctgaaacatattcgatttttctacag

Basic information

species Glycine max
transcript GLYMA07G31840.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193711766|gb|FK647865.1|FK647865
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298167911|gb|HO013174.1|HO013174
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGTAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298189754|gb|HO038157.1|HO038157
EST:     AGGCGCGGCGGGATCGGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298164705|gb|HO014350.1|HO014350
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCGGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208041564|gb|GD843014.1|GD843014
EST:     CGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298166233|gb|HO009204.1|HO009204
EST:     CGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208190348|gb|GD994524.1|GD994524
EST:     CGCGGCGGGATCAGCACAAGATTGCGAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|19346568|gb|BM891448.1|BM891448
EST:     CACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|213601378|gb|DB956684.1|DB956684
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298164434|gb|HO014079.1|HO014079
EST:     GCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCAAT
genomic: GCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208231930|gb|GE030885.1|GE030885
EST:     GCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: GCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298188012|gb|HO031969.1|HO031969
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|193447979|gb|FK414118.1|FK414118
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|16347870|gb|BI973465.1|BI973465
EST:     CAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298187978|gb|HO031935.1|HO031935
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|9259173|gb|BE347320.1|BE347320
EST:     GGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: GGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208156915|gb|GD956343.1|GD956343
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298190488|gb|HO032609.1|HO032609
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298171661|gb|HO021253.1|HO021253
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|10847435|gb|BF070122.1|BF070122
EST:     CAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298170108|gb|HO018732.1|HO018732
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|207696549|gb|GD678670.1|GD678670
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298170056|gb|HO018680.1|HO018680
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGA
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGA
EST: gi|298168528|gb|HO009458.1|HO009458
EST:     CACGCAGCGAGTTAGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CACGCAGCGAGTTAGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|193324144|gb|FK292592.1|FK292592
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|298168505|gb|HO009435.1|HO009435
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|208209117|gb|GE003527.1|GE003527
EST:     AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: AGGCGCGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
EST: gi|193703199|gb|FK639673.1|FK639673
EST:     CGGCGGGATCAGCACAAGATTGCAAAATGAAG                         TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT
genomic: CGGCGGGATCAGCACAAGATTGCAAAATGAAGgtgttgtctc ... ttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGAT