1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAGCCTCTGCAACAGAGTCTCAGATCTCTGCATTCCAATTCCCATGGCTGGTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCTgtaagtccttattttgttgctgctttttgccaaagttgtgattttgtgaactgggtatgctcaaagttgtgattttgtgaactgggtatgctcaaagttg...
species | Glycine max |
transcript | GLYMA07G31090.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCT AATCCTGGAAGTGTTCCCGCTGCCACTAATTCAAGGCTTCCACCTCTTAAGEST: gi|298199298|gb|HO042661.1|HO042661
genomic: GTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCTgtaagtcctt ... aaaatgttagAATCCTGGAAGTGTTCCCGCTGCCACTAATTCAAGGCTTCCACCTCTTAAG
EST: GTCGCTATGACAGTAACCCCTTCGACGAGGAAGAAGTTAACCCTTTCTCT AATCCTGGAAGTGTTCCCGCTGCCACTAATTCAATGCTTCCACCTCTTAAGEST: gi|23057519|gb|BU578193.1|BU578193
genomic: GTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCTgtaagtcctt ... aaaatgttagAATCCTGGAAGTGTTCCCGCTGCCACTAATTCAAGGCTTCCACCTCTTAAG
EST: GTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCT AATCCTGGAAGTGTTCCCGCTGCCACTAATTCAAGGCTTCCACCTCTTAAGEST: gi|17519206|gb|BM188248.1|BM188248
genomic: GTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCTgtaagtcctt ... aaaatgttagAATCCTGGAAGTGTTCCCGCTGCCACTAATTCAAGGCTTCCACCTCTTAAG
EST: GTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCT AATCCTGGAAGTGTTCCCGCTGCCACTAATTCAAGGCTTCCACCTCTTAAG
genomic: GTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCTgtaagtcctt ... aaaatgttagAATCCTGGAAGTGTTCCCGCTGCCACTAATTCAAGGCTTCCACCTCTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCCTCTGCAACAGAGTCTCAGATCTCTGCATTCCAATTCCCATGGCTGGTCGCTATGACAGTAACCCCTTCGATGAGGAAGAAGTTAACCCTTTCTCTgtaagtccttattttgttgctgctttttgccaaagttgtgattttgtgaactgggtatgctcaaagttgtgattttgtgaactgggtatgctcaaagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT