1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGCTGAACTCTGAAGTTAATTTTTGTTGCGAAAATGTCGGTGGCGAAGAAGTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAGgtttgtttgttttgtttgttatcatttgctcactcaatcgagtagctgcatatttttctttgtaattggggctttgatgcag
species | Glycine max |
transcript | GLYMA07G30970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAG ATGGCATCGTAGGCAACGTTTTGAAGGTTATGTTAGGTAAATACGGAAAGGEST: gi|298165242|gb|HO011291.1|HO011291
genomic: GTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAGgtttgtttgt ... tttgatgcagATGGCATCGTAGGCAACGTTTTGAAGGTTATGTTAGGTAAATACGGAAAGG
EST: GTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGTTGCTCAACACAG ATGGCATCGTAGGCAACGTTTTGAAGGTTATGTTAGGTAAATACGGAAAGGEST: gi|192311905|gb|FK004536.1|FK004536
genomic: GTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAGgtttgtttgt ... tttgatgcagATGGCATCGTAGGCAACGTTTTGAAGGTTATGTTAGGTAAATACGGAAAGG
EST: GTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAG ATGGCATCGTAGGCAACGTTTTGAAGGTTATGTTAGGTAAATACGGAAAGG
genomic: GTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAGgtttgtttgt ... tttgatgcagATGGCATCGTAGGCAACGTTTTGAAGGTTATGTTAGGTAAATACGGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTGAACTCTGAAGTTAATTTTTGTTGCGAAAATGTCGGTGGCGAAGAAGTTGATTAGATGCGTCATCCTTGACTTGGACGGCACGCTGCTCAACACAGgtttgtttgttttgtttgttatcatttgctcactcaatcgagtagctgcatatttttctttgtaattggggctttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT