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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGGAGTACCCTGGAAGCCTCACTCTATTTGTGACGGTAACATGTATAGTTGCAGCCATGGGTGGTTTAATCTTCGGTTACGATATCGGAATTTCAGgtactaattaacacacacatgtgtgtacacttatgttagtgttttattttgatttaacctatgatctgggtgagtgtataacttttatgttttaatgcctgtgcttgtgtgggttatgatcag

Basic information

species Glycine max
transcript GLYMA07G30880.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30880.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G21480.1 (Arabidopsis thaliana), 5'ss of exon 1
GGCAAGGAGTACCCTGGAAGCCTCACTCTATTTGTGACGGTAACATGTATAGTTGCAGCCATGGGTGGTTTAATCTTCGGTTACGATATCGGAATTTCAGgtactaattaacacacacatgtgtgtacacttatgttagtgttttattttgatttaacctatgatctgggtgagtgtataacttttatgttttaatgcctgtgcttgtgtgggttatgatcag
   || || || ||||| |  |||||||| |  || || || |||||||| || || |||||||||||| | |||||||||||||| ||||| || || ||||  ||| | | || | || |   |||||| |       |    |     |   || | |  |  | |    || | |    | | | ||| |                             
AAAAAAGAATATCCTGGTAAACTCACTCTTTACGTCACCGTGACATGTATTGTCGCCGCCATGGGTGGTCTCATCTTCGGTTACGACATCGGTATCTCCGgtaagaat-atctcata-atttac-tacactaa-----acgccaga----aaacaaaacaaaaaagttgaaacgtttttgttgtctttttttcag----------------------------

upper sequence: GLYMA07G30880.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0181g00010.t01 (Vitis vinifera), 5'ss of exon 1
GGCAAGGAGTACCCTGGAAGCCTCACTCTATTTGTGACGGTAACATGTATAGTTGCAGCCATGGGTGGTTTAATCTTCGGTTACGATATCGGAATTTCAGgtactaattaacacacacatgtgtgtacacttatgttagtgttttattttgatttaacctatgatctgggtgagtgtataacttttatgttttaatgcctgtgcttgtgtgggttatgatcag
|| ||||  || || || | ||| ||||  |  ||||| || |||||| | |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||  |   |    | |       ||    |||| |  ||||||  |||||   |     |||||   ||| | ||  |     ||   ||||  |  ||| | ||   |||||| |   |||
GGGAAGGCCTATCCCGGTAACCTTACTCCTTACGTGACTGTGACATGTGTTGTTGCAGCCATGGGTGGTTTGATCTTTGGTTACGATATTGGAATTTCTGgtaagagggatggaata-------gtgtggttatat--gtgttt--ttttggggtgtttgatgattcaggttaatgggt-----tttgatttttgtttctgggttt---tgggttgttg-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633382|gb|DW246745.1|DW246745
EST:     AGTTGCAGCCATGGGTGGTTTAATCTTCGGTTACGATATCGGAATTTCAG                         GTGGAGTGACGTCCATGGATCCGTTTCTGCTCAAGTTTTTTCCGTCAGTGT
genomic: AGTTGCAGCCATGGGTGGTTTAATCTTCGGTTACGATATCGGAATTTCAGgtactaatta ... ttatgatcagGTGGAGTGACGTCCATGGATCCGTTTCTGCTCAAGTTTTTTCCGTCAGTGT