Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTGCAGGTGCTTCAGCTTTTTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctctctctctctctctctctctctctaaatctacaatctccgcttatcactttccgttaccgtctaatttgagttggtttcag

Basic information

species Glycine max
transcript GLYMA07G30080.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 1
AGCGTGCAGGTGCTTCAGCTTTTTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctctctctctctctctctctctctctaaatctacaatctccgcttatcactttccg-ttaccgtctaatttgagttggtttcag
 |  ||| | |||||||||||  ||||  |  |  | ||||||||||||||   ||||||  |||||||||||||||| ||||||||  ||| |||||| ||      | || ||   | |   | | | |     | | |  | ||   |    | ||   | ||   || |   | | |||      ||
CGTCTGCCGATGCTTCAGCTTCATCACGGCCTTGACTGCCATTCTCTGCATTTGCGTCAATGTCCTCTCCGCCGTCCGATCCTTCAAGGACGGATCTGATgtgcgtaatatcactgctttttattttattttattctttgccttttcaagtgtggagttggtgcttgatgtttgtatggcgtt--ccgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4260445|gb|AI416941.1|AI416941
EST:     TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC                         ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG