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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTGCAGGTGCTTCAGCTTTTTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctctctctctctctctctctctctctaaatctacaatctccgcttatcactttccgttaccgtctaatttgagttggtttcag

Basic information

species Glycine max
transcript GLYMA07G30080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0017g00540.t01 (Vitis vinifera), 5'ss of exon 1
AGCGTGCAGGTGCTTCAGCTTTTTCACCTCTCTCGCCGCCATTCTCTGCATCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctctctctctctctctctctctctctaaatctacaatctccgcttatcactttccg-ttaccgtctaatttgagttggtttcag
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CGTCTGCCGATGCTTCAGCTTCATCACGGCCTTGACTGCCATTCTCTGCATTTGCGTCAATGTCCTCTCCGCCGTCCGATCCTTCAAGGACGGATCTGATgtgcgtaatatcactgctttttattttattttattctttgccttttcaagtgtggagttggtgcttgatgtttgtatggcgtt--ccgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319319|gb|FK009861.1|FK009861
EST:     AAACACGCATCTGAC                         ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: AAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: gi|192319318|gb|FK009860.1|FK009860
EST:     TCGCCGTCAGCTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC                         ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: gi|7028830|gb|AW458613.1|AW458613
EST:     TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC                         ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: gi|58022562|gb|CX709303.1|CX709303
EST:     TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC                         ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: gi|4260445|gb|AI416941.1|AI416941
EST:     TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC                         ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
EST: gi|58022278|gb|CX709019.1|CX709019
EST:     TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGAC                         ATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG
genomic: TCGCCGTCAACTTCCTCTCCGCCGTCCGTTCCTTCAAACACGCATCTGACgtaatacctc ... ttggtttcagATTTTCGACGGCATATTCCGGTGTTACGCGGTCCTCGTGGCGGCTTTCGTG