1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCCTAACCCGTCGTCTGGCGGGTGGGGCTTTTCGCCGCTCTCGTTTCTCTCCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAATgtgggtttccaaactacacaaaaatgcgccgtttaacatgaaattgggcttatctgaattattttttgatttgtgtgttaaatgtgttttccccttttta...
species | Glycine max |
transcript | GLYMA07G29660.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAAT GCTGCTGTAGTTGCAGAGACTGCATCAAAGAGCATTGCAGAGTTGCAAAACEST: gi|298195536|gb|HO043927.1|HO043927
genomic: CCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAATgtgggtttcc ... tgaaatgcagGCTGCTGTAGTTGCAGAGACTGCATCAAAGAGCATTGCAGAGTTGCAAAAC
EST: CCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAAT GCTGCTGTAGTTGTAGAGACTGCATCAAAGAGCATCGCAGAGTTGCAAAACEST: gi|23727581|gb|BU761824.1|BU761824
genomic: CCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAATgtgggtttcc ... tgaaatgcagGCTGCTGTAGTTGCAGAGACTGCATCAAAGAGCATTGCAGAGTTGCAAAAC
EST: CCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAAT GCTGCTGTAGTTGCAGAGACTGCATCAAAGAGCATTGCAGAGTTGCAAAAC
genomic: CCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAATgtgggtttcc ... tgaaatgcagGCTGCTGTAGTTGCAGAGACTGCATCAAAGAGCATTGCAGAGTTGCAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTAACCCGTCGTCTGGCGGGTGGGGCTTTTCGCCGCTCTCGTTTCTCTCCGATCTTCAGAAGGCCGCCGCTGTTGCCGCCGAAGAGATCTCTCGCAATgtgggtttccaaactacacaaaaatgcgccgtttaacatgaaattgggcttatctgaattattttttgatttgtgtgttaaatgtgttttccccttttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccc