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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTTCTTTCTCTCTATCGATTCTCGTAACAAACCCTACCCTTTTGAGTCTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattcattcaacacctccatttcccaatcatttccctttccaattcatcattttttttcaatccttatttgcttcgaactcttcattttatttta...

Basic information

species Glycine max
transcript GLYMA07G24950.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208326056|gb|GE121936.1|GE121936
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|254347326|gb|GR853575.1|GR853575
EST:     AAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: AAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298170625|gb|HO019249.1|HO019249
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298164494|gb|HO014139.1|HO014139
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|21887768|gb|BQ740981.1|BQ740981
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298194253|gb|HO040901.1|HO040901
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|15814266|gb|BI786541.1|BI786541
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|254347325|gb|GR853574.1|GR853574
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208123865|gb|GD922443.1|GD922443
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208178423|gb|GD977788.1|GD977788
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298199013|gb|HO042376.1|HO042376
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208158799|gb|GD954688.1|GD954688
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|193514832|gb|FK469678.1|FK469678
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298172716|gb|HO019756.1|HO019756
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298185548|gb|HO030761.1|HO030761
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298182508|gb|HO031243.1|HO031243
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|15661899|gb|BI699270.1|BI699270
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298175103|gb|HO014906.1|HO014906
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|208267617|gb|GE063740.1|GE063740
EST:     ATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGG-A
genomic: ATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|192301633|gb|FG994369.1|FG994369
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|21993992|gb|BQ785520.1|BQ785520
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|151403964|gb|EV273774.1|EV273774
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|151409397|gb|EV279205.1|EV279205
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298172581|gb|HO019621.1|HO019621
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAATGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
EST: gi|298196851|gb|HO041594.1|HO041594
EST:     CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGG                         TTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA
genomic: CTTCCAAGTTTTCACCATCGTAATGGGTTCCGAAGGATCCAGCGTCGTGGgtgagcattc ... gtccctgcagTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAA