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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttttttttcttttctttcgttggttgcttcaaaatatcaccatttgaatgaaatgttgtattggtttgtggctttgttgtgtgcag

Basic information

species Glycine max
transcript GLYMA07G18160.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttttttttcttttctttcgttggttgcttcaaaatatcac-catttga------------atgaaatgttgt--attggtt---tgtggctttgttgtgtgcag
||||||||  ||||||||||||||||||||||  |||||| |||||||||||  |||| ||||||||||||||||||| |||||||||||||||||||||||| |   | |   | |    || |  |  || ||  |    ||  | ||| ||             |   ||||||||  ||||| |   ||||   ||| |   |||||
CCATGAAGACCCTCTGGCTCGCCGTCTACATCGCCGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagtagtatacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttgattggatccgtgtgttgttgcttcctgcag

upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttttttttcttttctttcgttggttgcttcaaaatatcaccatttgaatgaaatgttgtattggtttgtggctttgttgtgtgcag
|||||| |   |||||||||| ||| |||||| | ||||| |||||||||||  |||| ||||||||||| ||||||| ||||||||||||||||||||||||           ||    |  ||| || || | |   |   || |   ||  ||    |    |  || ||||   |    ||   |||||
CCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAgtaa--------cctcacccccctcgctgtttccct---accttctcttcttccatccg-tccgctgatgatttggacccgccttccctgcag

upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacg-agttt-------tttttcttttctttcgttggttgcttcaaaatatcaccatttgaatgaaatgttgtattggtttgtggctttgttgtgt-gcag
|||||||||| || ||||| ||  | || ||| | |||||| | ||||| || || || ||||||||||| ||||| ||||| || |||||||||||||||| || || ||       ||||  | |   |  ||||   | ||  |  ||     ||    |||| |  ||||     ||| |   || ||| | |  |||
CCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAgttcgtagcttgatgaaattttagtatctctatgttgtaagttttgagttaatcgaatactgatgacaatttgtgggctttttttctttcgttttttcacag

upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttttttttcttttctttcgttggttgcttcaaaatatcaccatttg--aatgaaatgttgtattggtttgtggctt-tgttgtgtgcag---
| |||||||| || ||||| ||||| |||||  | |||||||| || ||||| ||| | ||||||||||| ||||| ||||| || ||||||||||||||||  |  ||| |   |  || |||  ||  ||  ||  |  ||| |  | |||  |||| || |||||    |||   ||||| |||| | | | |   
CTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAgtttg--tttctccacgatttttttttttttttttttgagttattattagttggtaatgtaaagttgttgatgttgtgggcttgtgttttttactgcag

upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagtttt----ttttcttttctttcgttggttgcttcaaaatatcaccatttgaatgaaatgttgtattggtttgtggcttt-gttgtgtgcag----
| |||| ||| || ||||||||| | |||||  | || ||||| ||||| || || ||||| |||||||||||||||| |||||| ||||||||||||||||  |   |||    |||   ||  | | | ||   | ||    || || || ||||   ||  || |   ||| |  | | ||   |     |  |     
CGATGAGGGATCTGTGGCTCGCCATTTACATTGTTGATGCTGTACTCGTATTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactttagggtttctattaatattgctga--gatttcgtatttctccttttgttagagttgattggttgctgcgagactgaaggaaaataaaataaa

upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32053 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttttttttcttttctttcgttggttgcttcaaaatatcaccatttgaatgaaatgttgtattggtttgtggctttgttgtgtgcag
|||||||||||||||||   |||||||||||| |||||||||| |||||||| || || || || ||  | ||||||| |||||| || ||||| || ||||| |   ||  |   || | |    | | |||  |  |    |||   ||||  |  | | ||   ||  |                     
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACAATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattactagtttctttccattcgattggcttgagtcctcattgtttgtgtttatttttcctttcatag-------------------

upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37798 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCCGTCTACATCCTCGACGCTGTCCTCGTCTTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttttttttcttttctttcgttggttgcttcaaaatatcaccatttgaatgaaatgttgtattggtttgtggctttgttgtgtgcag
|||||||||||||||||   |||||||||||| |||||||||| |||||||| || || || || ||  | ||||||| |||||| || ||||| || |||||  |||  ||  |  ||||||   |||| |      |  | |||   ||||  |  | | ||   ||                        
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACGATGTTCTACTACGAAGGTGACCAAGAGAAgta--agtcattactagtttcttcgattggct----tgagttctcattgtttgtgtttatttttcctttcacag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996461|gb|BM085833.1|BM085833
EST:     TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAA                         GAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC
genomic: TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttt ... ttgtgtgcagGAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC
EST: gi|254348008|gb|GR854257.1|GR854257
EST:     TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAA                         GAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC
genomic: TTTTTCGTTATCCCCTTCGCCATGTTCTTCTACGAGGGCGACCAGGACAAgtacgagttt ... ttgtgtgcagGAGTGTGGGGAAGAGGATTAAGAGTGCGTTGATGTGGATGGTCACCACGGC