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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaagtagtcattttccaattcccaattagggcttttcattctacctatgcattcgattctttttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag

Basic information

species Glycine max
transcript GLYMA07G15610.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15610.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g53140.1 (Oryza sativa), 5'ss of exon 1
GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaagtagtcattttccaattcccaattagggcttttcattctaccta-tgcattcgattctt-tttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag
 |||||||| ||||| ||||| ||||||| ||| ||  | || ||| |||||||| ||||  | ||| ||||||||||||||||||||||||||||||||||| |   ||   ||||| | ||| | |           | || ||   |||||   |||| | |||  |  |   || ||||| | |  ||||     |                                                                         
CGAGTTCAACTTCCGCTGGACGCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCCGTCCCCATCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtacgcgatc---ttccagtcccctactcccttcccctgtcctccccgctgcatcgtattcctgtttgcttgtagcttctgttagattcagattggggttgct----------------------------------------------------------------------

upper sequence: GLYMA07G15610.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G004111_T02 (Zea mays), 5'ss of exon 1
GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaagtagtcattttccaattcccaattagggcttttcattctacctatgcattcgattctttttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag
 |||||||||||||| ||||| ||||||| ||| ||  | || ||| |||||||| ||||| | ||| ||||||||||||||||||||||||| ||||||||||      ||   | |   ||         ||| || ||| || | | | ||   | |  ||||| |   |  || | ||       ||||||  ||| ||    |                                                               
CGAGTTCAATTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccactatag-cgagcccct--------cttgtcgttccac-tgtccctt---tcccctttctccaaaccctaagata------aattttctgtttgttcctgctg-------------------------------------------------------------

upper sequence: GLYMA07G15610.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G004111_T01 (Zea mays), 5'ss of exon 1
GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaagtagtcattttccaattcccaattagggcttttcattctacctatgcattcgattctttttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag
 |||||||||||||| ||||| ||||||| ||| ||  | || ||| |||||||| ||||| | ||| ||||||||||||||||||||||||| ||||||||||      ||   | |   ||         ||| || ||| || | | | ||   | |  ||||| |   |  || | || | ||    |||     |  |        |  |                                                        
CGAGTTCAATTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccactatag-cgagcccct--------cttgtcgttccac-tgtccctt---tcccctttctccaaaccctaagataaattttctgtttgttcctgctgggttggatccag-------------------------------------------------------

upper sequence: GLYMA07G15610.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G149105_T01 (Zea mays), 5'ss of exon 1
GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaagtagtcattttccaattcccaattagggcttttcattctacctatgcattcgattctttttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag
 |||||||| ||||| ||||| ||||||| ||| ||  | || ||| |||||||| ||||| | ||| ||||||||||||||||||||||||| ||||||||||      ||            |   ||  | | | |   | ||  ||         ||||  | |   ||   |   ||   |    |||    ||  |  |      |      |  | | ||| |                                         
CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccactat------------agcgagcacctcttaccgttccactgt------ccctttcccctttctccaaaccctaagatcaattttctgtttgttcctgctgggttggatccagcatatgcag-----------------------------------------

upper sequence: GLYMA07G15610.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G149105_T03 (Zea mays), 5'ss of exon 1
GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaagtagtcattttccaattcccaattagggcttttcattctacctatgcattcgattctttttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag
 |||||||| ||||| ||||| ||||||| ||| ||  | || ||| |||||||| ||||| | ||| ||||||||||||||||||||||||| ||||||||||      ||            |   ||  | | | |   | ||  ||         ||||  | |   ||   |   ||   |    |||    ||  |  |                                                                  
CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccactat------------agcgagcacctcttaccgttccactgt------ccctttcccctttctccaaaccctaagatcaattttctgtttgttcctgctg--------------------------------------------------------------

upper sequence: GLYMA07G15610.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G149105_T02 (Zea mays), 5'ss of exon 1
GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaa---------gtagtcattttccaattcccaattagggcttttcattctacctatgcattcgattctttttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag
 |||||||| ||||| ||||| ||||||| ||| ||  | || ||| |||||||| ||||| | ||| ||||||||||||||||||||||||| ||||||||||         |    ||  |   |     | | |    |||| |  | |  | |  |  |    ||  |||  |  || ||  || |    ||||||                                                                                
CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccactatagcgagcacctcttaccgttccactgtccctttcccctttctccaaaccctaagatcaattttctgtttgttcctgctggg-ttggatccag----------------------------------------------------------------------------