Sequence
atgc intronic sequence ATGC exonic sequenceGCAGGCCTGCACCGTGCTCGGCGACTACGGCGCCGCCGACAACAGCGCCTTCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGgtcatcattctctgtaacatgaacacgtttgttttgtcttagaagtagaaaccattcaaaataaaaggagaaagcttatccacaatttcttaggtgctgt...
Basic information
species | Glycine max |
transcript | GLYMA07G12850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G12850.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G44590.2 (Arabidopsis thaliana), 5'ss of exon 1
---GCAGGCCTGCACCGTGCTCGGCGACTACGGCGCCGCCGACAACAGCGCCTTCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGgtcatcattctct---gtaacatgaacacgtttgttttgtcttagaagtagaaaccattcaaaataaaaggagaaagcttatccacaatttcttaggtgctgt
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ACAAAGAGCATGCACCGTAGTCGGCGATCATGGCGGC---GATAGCAACGCTCTATCTTCTCTATGGGAAGCTCTTCCTTCCGTCGCCGTCGTTGGTGGCCAGgttttgtctcaatcagataactctaacatagtt-ttttctcttaagctt----gtcttttaa-------gggttttgttcttcttcttcttaatgagtgtag-
upper sequence: GLYMA07G12850.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G60190.1 (Arabidopsis thaliana), 5'ss of exon 1
GCAGGCCTGCACCGTGCTCGGCGACTACGGCGCCG---CCGACAACAGCGCCTTCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGgtcatcattctctgtaacatgaacacgtttgttttgtcttagaagtagaaaccattcaaaataaaaggagaaagcttatccacaatttcttaggtgctgt----
|| || ||||| ||||| ||||| || | | | | | | ||| ||| ||||||||||||||||||||| ||||||| ||||||||||| ||||| || ||||| | || | |||| || | ||| | | | || |||| ||| || || |||
---AGCATGTACCGTACTCGGTGACTATGGTGGTGGAACTGGAAGTAACGCTTTCAATTCTCTCTGGGAAGCTCTTCCAACCGTCGCCGTCGTCGGTGGTCAGgtgat--ttctccg--gttgaaatatctttgacttcttcc-----taggttttctctctggtgactcttcaa--cttactt----tttttttgggtttgtgcag
upper sequence: GLYMA07G12850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0021g00480.t01 (Vitis vinifera), 5'ss of exon 1
---GCAGGCCTGCACCGTGCTCGGCGACTACGGCGCCGCCGACAACAGCGCCTTCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGgtcatcattctctgtaacat-gaacacgtttgttttgtcttagaagtagaaaccattcaaaataaaaggagaaagcttatccacaatttcttaggtgctgt-----------------------------
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CCAGAGAGCGTGTACTGTTCTCGGCGATTATGGCGGTGGCGACAACA---CCTTCTCTTCTCTATGGGAAGCGCTTCCCTCTGTCGCTGTTGTTGGAGGACAGgtttttaaagctgctcttattgcttttgaaagcccgattttgaagattattattattattattattattattattattattattagtattattattattttgaattttgttttgttttgattgagatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37997428|gb|CF809017.1|CF809017EST: TCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAG AGTTCGGGGAAGTCTTCGGTTTTGGAAAGCATCGTTGGACGTGACTTTCTT
genomic: TCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGgtcatcattc ... atgaatacagAGTTCGGGGAAGTCTTCGGTTTTGGAAAGCATCGTTGGACGTGACTTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGGCCTGCACCGTGCTCGGCGACTACGGCGCCGCCGACAACAGCGCCTTCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGgtcatcattctctgtaacatgaacacgtttgttttgtcttagaagtagaaaccattcaaaataaaaggagaaagcttatccacaatttcttaggtgctgt
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