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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTACAGGCTGCTCAACCCTTTCAGATATGAGGTTTACACCACTGAGCCAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactttaatcattgctagatgaattgtttcgtaagttgactgtcattttttttaggatgaatagattattatgcacatgaataattctaaatttt...

Basic information

species Glycine max
transcript GLYMA07G09160.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0048g01690.t01 (Vitis vinifera), 5'ss of exon 1
GACTTACAGGCTGCTCAACCCTTTCAGATATGAGGTTTACACCACTGAGCCAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtacttt-aatcattgctagatgaattgtttcgtaagttgactgtcattttttttaggatgaatagattattatgcacatgaataattctaaatttt
|||||||||||| |||| ||| || ||  ||||| ||| |||  |||| ||| ||||||| |||||||||||||| || || || ||||||||||| ||||||     | | |||||   ||   |   |  | |     |||   ||      |||  ||||  |  ||  | ||      |||  |  |  |  | |  
GACTTACAGGCTACTCAGCCCCTTTAGGAATGAGATTTTCACTGCTGACCCAGCTAATGTCGAGTATATACTCAAGACAAACTTCGAGAATTATGGCAAGgtaaaggttctcaatcaaaactcatttcttattattacttgtttcttgaagaaatttgcaggaatatcagggttttggctgtatgggttttaatggactg-

upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0048g01670.t01 (Vitis vinifera), 5'ss of exon 1
GACTTACAGGCTGCTCAACCCTTTCAGATATGAGGTTTACACCACTGAGCCAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtacttt-aatcattgctagatgaattgtttcgtaagttgactgtcattttttttaggatgaatagattattatgcacatgaataattctaaatttt
||||||||||||||||| ||| || ||  ||||| |||||||  |||| ||| ||||||| |||||||||||||| || || || ||||||||||| ||||||    || | |||||   |   ||   |  | |     |||   ||      |||  ||||  |  ||  | ||       ||  |  |  |  | |  
GACTTACAGGCTGCTCAGCCCCTTTAGGAATGAGATTTACACTGCTGACCCAGCTAATGTCGAGTATATACTCAAGACAAACTTCGAGAATTATGGCAAGgtaaaggctctcaatcaaaacccaattcttattattacttgtttcttgaagaaatttgcaggaatatcagggttttggctgtttgggttttaatggactg-

upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0048g01680.t01 (Vitis vinifera), 5'ss of exon 1
GACTTACAGGCTGCTCAACCCTTTCAGATATGAGGTTTACACCACTGAGCCAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtacttt-aatcattgctagatgaattgtttcgtaagttgactgtcattttttttaggatgaatagattattatgcacatgaataattctaaatttt
||||||||||||||||| ||| || ||  ||||| |||||||  |||| ||| ||||||| |||||||||||||| || || || ||||||||||| ||||||    || | |||||   |    |   |  | |     |||   ||      |||  ||||  |  ||  | ||      |||  |  |  |  | |  
GACTTACAGGCTGCTCAGCCCCTTTAGGAATGAGATTTACACTGCTGACCCAGCTAATGTCGAGTATATACTCAAGACAAACTTCGAGAATTATGGCAAGgtaaaggctctcaatcaaaacccatttcttattattacttgtttcttgaagaaatttgcaggaatatcagggttttggctgtatgggttttaatggactg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317245|gb|GR826190.1|GR826190
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
EST: gi|19269065|gb|BM885321.1|BM885321
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
EST: gi|213596194|gb|DB960154.1|DB960154
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
EST: gi|209711863|gb|BW674127.1|BW674127
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
EST: gi|209719366|gb|BW674444.1|BW674444
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
EST: gi|213600549|gb|DB960097.1|DB960097
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
EST: gi|213592396|gb|DB971594.1|DB971594
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGCACT-ACTAGGTGATGGGATCTT
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGG-ATTTACTAGGTGATGGGATCTT
EST: gi|192295638|gb|FG990492.1|FG990492
EST:     CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAG                         GGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC
genomic: CAACTAATGTTGAGTATATACTCAAAACCAATTTTGAGAATTATGGAAAGgtaggtactt ... ttttttgcagGGCTTATACAACTACCACAATTTGAAGGATTTACTAGGTGATGGGATCTTC