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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCCGAACTACGACATGGACGCGGCATGGTGCGACACCGTGGATCGGAGAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgtttttatagttttttggttgaaaattgggaattgctgtggttttgtttttggcctagagtctttggttggcctagtcaattaaaaattaaataga...

Basic information

species Glycine max
transcript GLYMA07G08370.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13477523|gb|BG507371.1|BG507371
EST:     GAGCTGAGCATAAGAAGGAGAAGCTCCAGAACGAACTTAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTACGATGGGATTCAATGATTTTTGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|9264556|gb|BE352703.1|BE352703
EST:     GAGCTGAGCACAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|298187192|gb|HO034341.1|HO034341
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGAT
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGAT
EST: gi|6667021|gb|AW278480.1|AW278480
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAGAGCATTAGGATGGGATTCAATGATTGTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|10846757|gb|BF069622.1|BF069622
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAAG                         ACANACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGANTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|16996698|gb|BM086070.1|BM086070
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|8827066|gb|BE210796.1|BE210796
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|5677037|gb|AI938167.1|AI938167
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATT
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATT
EST: gi|15661549|gb|BI698920.1|BI698920
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|19346061|gb|BM890941.1|BM890941
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|7685795|gb|AW756443.1|AW756443
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
EST: gi|19346011|gb|BM890891.1|BM890891
EST:     GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGG                         ACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC
genomic: GAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgttttt ... ttttttgcagACAAACTTGATTAAGGAAAGCATTAGGATGGGATTCAATGATTTTGGAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCCCGAACTACGACATGGACGCGGCATGGTGCGACACCGTGGATCGGAGAGCTGAGCAGAAGAAGGAGAAGCTCGAGAACGAACTCAATGCCTATAGGgttcgtttttatagttttttggttgaaaattgggaattgctgtggttttgtttttggcctagagtctttggttggcctagtcaattaaaaattaaataga

- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa