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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGTTATAAAAGGACATCACTTTTAGAGGTTCTTATCAGGAATAATGTTCCATTGCTTAGGGCCACCTGGTTTATCAAGGTTACTTACCTCAATCAGgtagggatgcttcagtgttggtatatttaccaattatgatgaattgctttatattttttaatatttgtagattatgattggctttttcag

Basic information

species Glycine max
transcript GLYMA07G07710.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07710.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0046g02510.t01 (Vitis vinifera), 5'ss of exon 7
TCATGGTTATAAAAGGACATCACTTTTAGAGGTTCTTATCAGGAATAATGTTCCATTGCTTAGGGCCACCTGGTTTATCAAGGTTACTTACCTCAATCAGgtagggatgcttcagtgttggtatatttaccaattatgatgaatt--gct-ttatattttttaatatttgtagattatgattggctttttcag----
||||||||  |  | || |   ||||| || |||||||||||||||||||||||||| || || || || |||||||| || || ||||| || || |||||||  ||||||||        || ||      ||    |||  |  ||| || |   | || |   |   ||||||||  ||  || ||       
TCATGGTTTCAGGAAGAAAAACCTTTTTGAAGTTCTTATCAGGAATAATGTTCCATTACTGAGAGCAACTTGGTTTATTAAAGTAACTTATCTTAACCAGgtag--atgcttcaa-acactcatgttgcttctttggactgagcttagctattgttaatattgaaggtaacagattatggctgttttctttttacag