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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGTTCAGTACAATATCTATGGCAATCTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaagactctttttcgctgaatttattagcatttgtttttttttttctgttgttggtttcatttatatatttattttgtaaaggagtgtccttg...

Basic information

species Glycine max
transcript GLYMA07G07270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G46070.1 (Arabidopsis thaliana), 5'ss of exon 1
GCTATGTTCAGTACAATATCTATGGCAATCTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa--gactctttttcgctgaatttattagcatttgtttttttttttctgttgttggtttcatttatatatttattttgtaaaggagtgtccttg
||||||||||||||||  | |||||  | |||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||  |||||||| ||||||||      || ||||| ||    || |||| |     |   || | ||   ||||    |  || || ||   |  ||||                  
GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGgtaagttcttttgattctttgtctgataaattatgaaagcgttccttctattgaatgttcacaggctc-ttgattcttgaatttcag---------------

upper sequence: GLYMA07G07270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G01370.1 (Arabidopsis thaliana), 5'ss of exon 1
GCTATGTTCAGTACAATATCTATGGCAATCTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaagactctttttcgctgaatttattagcatttgtttttttt-tttctgttgttggtttcatttatatattta--ttttgtaaaggagtgtccttg------------------------------
||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||| |||||| |||| ||| | ||||||||||||||||| ||||| |||| |||   | | |   |     ||  ||| ||   |  |||  | ||   |||||  |||  ||  ||||    |||    ||||| ||     |||  ||                               
GCTATGTTCAGTATAATGTCTATGGCAATCTCTTCGAAGTTTCTAGAAAGTATGTTCCTCCTCTTCGTCCTATCGGTAGAGGCGCTTATGGAATTGTCTGgtgagttccaaaattaatcagattgggttt-ttgaaacatgtaatgttcacttctggggttc-ttagatttgggaattagggttttggaatctgttgttattataataacttgtgttgataattgttgatcag

upper sequence: GLYMA07G07270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G01560.1 (Arabidopsis thaliana), 5'ss of exon 1
GCTATGTTCAGTACAATATCTATGGCAATCTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaag--tcaaagactctttttcgctgaatttattagcatttgtttttttttttctgttgttggtttcatttatatatttattttgtaaaggagtgtccttg
| ||||| ||||| ||| ||||||| ||||||||||||||||| | ||||||||| |||||| |||| ||| | || |||||||||| ||| || || |||| ||  || || ||| || |    |   ||| | ||  |||   |||     |  |   ||   || |    ||  ||| |  |  |||   |||   |  
GTTATGTGCAGTATAATGTCTATGGAAATCTCTTTGAAGTTTCTAAAAAGTATGTTCCTCCTCTTCGTCCTATCGGCAGAGGCGCTTCTGGCATCGTCTGgttagcatctaaaactgttgtcttttt--tttttgagtttttagctttagagatgagacattttgttaaaggctaagtttgtgctcaaaacttgtgatttct

upper sequence: GLYMA07G07270.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0046g02010.t01 (Vitis vinifera), 5'ss of exon 1
GCTATGTTCAGTACAATATCTATGGCAATCTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaagactctttttcgctgaatttattagcatttgtttttttttttctgttgttggtttcatttatatatttattttgtaaaggagtgtccttg------
| ||||||||||||||| | ||||| || ||||| |||||||| || ||||| || || || ||||| ||||||||| | || ||||||||||| || |||||||      ||| || |  | | ||  | ||     ||  |||    | | | ||| | |  |  || ||   |||  ||| |  ||   |||   |       
GGTATGTTCAGTACAATGTGTATGGGAACCTCTTCGAAGTTTCTAGGAAGTACGTGCCGCCAATTCGGCCTGTGGGTCGTGGTGCTTATGGTATCGTGTGgtaag-----aactgttatgggtttaagcttttttttctttctttcaaatatttattgcttggatt-ttcatggttttgatttttggagatttgtttctttgagct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11275203|gb|BF325526.1|BF325526
EST:     TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTG                         CGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
genomic: TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa ... tttccttcagCGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
EST: gi|151396148|gb|EV266025.1|EV266025
EST:     TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTG                         CGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
genomic: TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa ... tttccttcagCGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
EST: gi|254328119|gb|GR835084.1|GR835084
EST:     TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTG                         CGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
genomic: TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa ... tttccttcagCGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
EST: gi|22522756|gb|BU081567.1|BU081567
EST:     TATGTCCCTCCTATTCGTCCTGTGGGTAGAGGCGCTTATGGTATTGTTTG                         CGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
genomic: TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa ... tttccttcagCGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
EST: gi|254315198|gb|GR830191.1|GR830191
EST:     TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTG                         CGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
genomic: TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa ... tttccttcagCGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
EST: gi|9264552|gb|BE352699.1|BE352699
EST:     TATGTCCCTCCTATTCGTCCTGTGGGTAGAGGCGCTTATGGTATTGTTTG                         CGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG
genomic: TATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa ... tttccttcagCGCTGCTGTAAATGCAGAGACAGGTGAGGAAGTTGCCATTAAGAAGATTGG