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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcggatccctcttctatcgtctctgtagcatactttgttattttgcagaatctgaattttagttatccattttttattcaagctatgttccca...

Basic information

species Glycine max
transcript GLYMA07G06580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233784|gb|AW569127.1|AW569127
EST:     TTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|9564071|gb|BE473580.1|BE473580
EST:     GGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAAAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|33387329|gb|CA850536.1|CA850536
EST:     GAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGCAAATCAAAAGCCTACTTCAAGAGATATCAAGT
genomic: GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAG-AAATCAAAAGCCTACTTCAAGAGATATCAAGT
EST: gi|7478382|gb|AW666243.1|AW666243
EST:     GAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|38192446|gb|CF921652.1|CF921652
EST:     ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAACAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATGTCAAGTC
genomic: ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|192333617|gb|FK025434.1|FK025434
EST:     CCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|151409715|gb|EV279523.1|EV279523
EST:     ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCCCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|10846870|gb|BF069669.1|BF069669
EST:     GAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|192333816|gb|FK025077.1|FK025077
EST:     GTCACTCTTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GCGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GTCACTTTTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|18721850|gb|BM523372.1|BM523372
EST:     CTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|24205962|gb|BU965215.1|BU965215
EST:     TTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|17964387|gb|BM271123.1|BM271123
EST:     GTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|22523868|gb|BU082679.1|BU082679
EST:     GAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|24205862|gb|BU965115.1|BU965115
EST:     TTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|15285156|gb|BI469047.1|BI469047
EST:     CTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|24205298|gb|BU964551.1|BU964551
EST:     TTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|151397139|gb|EV267012.1|EV267012
EST:     GTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAACCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|4285594|gb|AI440926.1|AI440926
EST:     GGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|33388021|gb|CA851228.1|CA851228
EST:     CTCCTTTCCGTCACTTTT-GGG--GAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|26045622|gb|CA783155.1|CA783155
EST:     TTGGGAGAAGAGCTTGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|16346338|gb|BI971933.1|BI971933
EST:     CACTCTTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CACTTTTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|4396042|gb|AI495039.1|AI495039
EST:     GAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|151411465|gb|EV281276.1|EV281276
EST:     ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|20207598|gb|BQ133687.1|BQ133687
EST:     GAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|6481795|gb|AW201066.1|AW201066
EST:     TTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|6567363|gb|AW234974.1|AW234974
EST:     TTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|5753627|gb|AI960914.1|AI960914
EST:     TTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|18692813|gb|BM521661.1|BM521661
EST:     GGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|213590604|gb|DB973335.1|DB973335
EST:     ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|298199535|gb|HO042898.1|HO042898
EST:     GTCACTCTTGGGAGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GTCACTTTTGGG-GAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|6665970|gb|AW277429.1|AW277429
EST:     ACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|15662084|gb|BI699455.1|BI699455
EST:     CACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|14259966|gb|BG882874.1|BG882874
EST:     GGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGATCAGAAATCGAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|151410521|gb|EV280336.1|EV280336
EST:     ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATG                         GTGTACGTCAAGGCCCAGCAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcg ... catattaaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGgtgcgtttcggatccctcttctatcgtctctgtagcatactttgttattttgcagaatctgaattttagttatccattttttattcaagctatgttccca

- - - - - - - - - - -  GGAAGA
- - - - - - - - - - - -  AAGAGG