1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGGTGGGAAGATATTTTCGACGATTTTCGCGGTTGTGGGCGAAAGCTGGCTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAAgtaaagggcggtttcaatttttttattatatatattgaggatgaagtcaatttcatttactctgttttcttcttcgtttggttccttgtgatcgattag
species | Glycine max |
transcript | GLYMA07G05530.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGTAAGCTCGACAAAGAAGCAAGCAA GGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGAEST: gi|193352862|gb|FK315130.1|FK315130
genomic: TCGTAAGCTCGACAAAGAAGCAAGCAAgtaaagggcg ... gatcgattagGGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGA
EST: CTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAA GGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGAEST: gi|213595702|gb|DB962474.1|DB962474
genomic: CTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAAgtaaagggcg ... gatcgattagGGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGA
EST: CTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAA GGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGAEST: gi|209726010|gb|BW654795.1|BW654795
genomic: CTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAAgtaaagggcg ... gatcgattagGGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGA
EST: CTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAA GGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGA
genomic: CTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAAgtaaagggcg ... gatcgattagGGTTATTATTCTTTGTGGTTGCGGAACGAAGCATGCTGTTGCTGTTCGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTGGGAAGATATTTTCGACGATTTTCGCGGTTGTGGGCGAAAGCTGGCTGCCAGCGATAGTGAATCAGAATCGTAAGCTCGACAAAGAAGCAAGCAAgtaaagggcggtttcaatttttttattatatatattgaggatgaagtcaatttcatttactctgttttcttcttcgtttggttccttgtgatcgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA