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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAACAAACCATCTTCTTCCTTGGATCTCTTTACCTTCTTCCAAAGTATTTGCTTTTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAGgtttgttatttgctttgttccaatccttataatatatcctttcttttgttaatgttattatgtttagtattgttttcatgcatcaagttattattttcct...

Basic information

species Glycine max
transcript GLYMA07G05390.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344222|gb|GR851025.1|GR851025
EST:     TTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAG                         ATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
genomic: TTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAGgtttgttatt ... gtctttgaagATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
EST: gi|17400209|gb|BM176991.1|BM176991
EST:     TTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAG                         ATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
genomic: TTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAGgtttgttatt ... gtctttgaagATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
EST: gi|254315134|gb|GR830127.1|GR830127
EST:     TTGCTTTTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAG                         ATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
genomic: TTGCTTTTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAGgtttgttatt ... gtctttgaagATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
EST: gi|209698574|gb|BW652427.1|BW652427
EST:     TTGCTTTTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAG                         ATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
genomic: TTGCTTTTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAGgtttgttatt ... gtctttgaagATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
EST: gi|151399288|gb|EV269159.1|EV269159
EST:     TTGCTTTTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAG                         ATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT
genomic: TTGCTTTTATTTTTTGTTGAAAAAAGTGTTTGCTTTTGCCGTTGTACAAGgtttgttatt ... gtctttgaagATGAGTGATGAGAATAATGAAGAACCTTGCGAAAACCGTCCGGTTCCCCGT