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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTGTTGGTGGTGGCGGTGACAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatgtttttcaatcttcgttcattctctctttctcaaaatgcttgatctctctctaactctttgtgtgcattgaaacaaaag

Basic information

species Glycine max
transcript GLYMA07G04830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165347|gb|HO011396.1|HO011396
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|192323993|gb|FK018684.1|FK018684
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|298194118|gb|HO040766.1|HO040766
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAAAAAG                         TTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|298184473|gb|HO029686.1|HO029686
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|298163373|gb|HO012106.1|HO012106
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|192318066|gb|FK007180.1|FK007180
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|298179745|gb|HO024960.1|HO024960
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|192318065|gb|FK007179.1|FK007179
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|298168411|gb|HO009341.1|HO009341
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|192325825|gb|FK018047.1|FK018047
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: gi|298177341|gb|HO027122.1|HO027122
EST:     GTCGAGATTGCGAAGACTGATCCAAGCTCCAGTTGATGCTACTAAGAAAG                         TTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatg ... gaaacaaaagTTATATCTGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCACTGTTGGTGGTGGCGGTGACAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactatatgtttttcaatcttcgttcattctctctttctcaaaatgcttgatctctctctaactctttgtgtgcattgaaacaaaag

- - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA