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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATCATTCGGGTTTTTGTTACTCGGTTCATTCGAATGGCGACATCCTTGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatcttcagcccttaatttttatgcatgtttaatcattacttagtttatttttcgcatctattttgtgtgaataatacaaagttacattctttaca...

Basic information

species Glycine max
transcript GLYMA07G03660.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163747|gb|HO012480.1|HO012480
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|58016821|gb|CX703563.1|CX703563
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|208280615|gb|GE075857.1|GE075857
EST:     AAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: AAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|58023219|gb|CX709960.1|CX709960
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|192295784|gb|FG990850.1|FG990850
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|151407112|gb|EV276927.1|EV276927
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|298190883|gb|HO033004.1|HO033004
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAGTGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|298187580|gb|HO034729.1|HO034729
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
EST: gi|298171416|gb|HO016448.1|HO016448
EST:     TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT
genomic: TGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtggcagTTAAATGGGTTGTTTTATTGCACAAGATACTCGAATACTGTGTCAAATGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGATCATTCGGGTTTTTGTTACTCGGTTCATTCGAATGGCGACATCCTTGTCAAACGTGTTTTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatcttcagcccttaatttttatgcatgtttaatcattacttagtttatttttcgcatctattttgtgtgaataatacaaagttacattctttaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC