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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAAATAGTGTGATTCATGGCTGCAACGAATGCGTCAATCTTTGCATCTTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctctctaatctaatgcgtgtttatttcatttttattgcgtctttgtctccaataatatgttatgttatatgaaactttaagattttgctgcaaa...

Basic information

species Glycine max
transcript GLYMA07G03360.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03360.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g06980.t01 (Vitis vinifera), 5'ss of exon 1
ACCAAAATAGTGTGATTCATGGCTGCAACGAATGCGTCAATCTTTGCATCTTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctctctaatctaatgcgtgtttatttcatt--tttattgcgtctttgtctccaataatatgttatgttatatgaaactttaagattttgctgcaaa---------------------------
                        ||||| | ||  |||||||||||||||||||||||||   | || |||       || |  || |    ||   |||  ||||  ||   |  |  ||  | ||  |   |   ||||    || || || |   || | ||| |   ||  |||    ||   |  | |    || |                           
------------------------GCAACTACTGGTTCAATCTTTGCATCTTCCACGCAAC---GTTTTCCTACAGTGACTTCGGTTTCGGGTACAAATGGG-AGTCCATCCGTTGCAG-GCAGGCTTGgtgagtccgtttaagctgttttggtatttgattagatgctgctttggatggggtttgttgtatatcaaacagattttattaatttgaagcatggatgagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813310|gb|BQ297788.1|BQ297788
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|19270363|gb|BM886619.1|BM886619
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|20815004|gb|BQ299482.1|BQ299482
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|22522339|gb|BU081150.1|BU081150
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|5678007|gb|AI939137.1|AI939137
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|20812780|gb|BQ297258.1|BQ297258
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|19053187|gb|BM731854.1|BM731854
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|21994672|gb|BQ786200.1|BQ786200
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|20498211|gb|BQ273141.1|BQ273141
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|15000090|gb|BI320904.1|BI320904
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|16349259|gb|BI974854.1|BI974854
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|9901740|gb|BE610708.1|BE610708
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|20813584|gb|BQ298062.1|BQ298062
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|20497978|gb|BQ272908.1|BQ272908
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
EST: gi|10234637|gb|BE803525.1|BE803525
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAAGTTACCTTGTGAAGAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAA-GTTACCTTGTGAAGAAA
EST: gi|213595810|gb|DB966225.1|DB966225
EST:     TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTG                         CTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA
genomic: TTCCACGCAACCATGCTTGCCTGTGCCTCCTACCATTCCAAACACGCTTGgtcagtctct ... tctcatgtagCTACTCCTTTTCTCAATGTTTCGTCACCAAGAAGTTACCTTGTGAAGAAAA