Sequence
atgc intronic sequence ATGC exonic sequenceTTTTTTTCCTCATCATCATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTgtaattcactttccctcactaacaaactgatcacaccacattcacttgacctttttctttttctttattaaagacaataaatttccatcacaattctccc...
Basic information
species | Glycine max |
transcript | GLYMA07G02930.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G02930.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S79_25V6.1 (Physcomitrella patens), 5'ss of exon 1
TTTTTTTCCTCATCATCATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTgtaattcactttccctcactaacaaactgatcacaccacattcacttgacctttttctttttctttattaaagacaataaatttccatcacaattctccc-----
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-----------------ATGGGCAGGCC---ACAGAGATACCGAGGGGTGCGCCAAAGGCACTGGGGATCGTGGGTCTCCGAGATTCGCCACCCGCTTCTgtaagtca--tgctcctgtctccgagcataccacag-atcctttttctccgatgaccattgtgagaatgtgggatgttg--ttttagttggaatttttcgtttatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|111037570|gb|DY577483.1|DY577483EST: CGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATT GAAGACTAGAATATGGCTAGGAACTTTTGAAACGGCAGAAGATGCAGCAAG
genomic: CGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTgtaattcact ... tggaccacagGAAGACTAGAATATGGCTAGGAACTTTTGAAACGGCAGAAGATGCAGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTTTTCCTCATCATCATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTgtaattcactttccctcactaacaaactgatcacaccacattcacttgacctttttctttttctttattaaagacaataaatttccatcacaattctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc