1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACTTGCTTGAATTTTATTGGAAGCCATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatagaaataaagatcgaataatattatatcattcttcttgcgagcactccctgaagctcttacgggaaatgctttcattcagaacatatatagtttgatatgggagttattcattcattgtcgtgtgttgatttcag
species | Glycine max |
transcript | GLYMA07G02630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|213597737|gb|DB964474.1|DB964474
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|151404463|gb|EV274277.1|EV274277
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|213611520|gb|DB960800.1|DB960800
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|192306949|gb|FG999968.1|FG999968
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGAAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|209713520|gb|BW681521.1|BW681521
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|209712903|gb|BW679180.1|BW679180
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|9259966|gb|BE348113.1|BE348113
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: TAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|21993790|gb|BQ785318.1|BQ785318
genomic: TAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTGEST: gi|192296121|gb|FG989481.1|FG989481
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGCTTGAATTTTATTGGAAGCCATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatagaaataaagatcgaataatattatatcattcttcttgcgagcactccctgaagctcttacgggaaatgctttcattcagaacatatatagtttgatatgggagttattcattcattgtcgtgtgttgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT