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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCTTGAATTTTATTGGAAGCCATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatagaaataaagatcgaataatattatatcattcttcttgcgagcactccctgaagctcttacgggaaatgctttcattcagaacatatatagtttgatatgggagttattcattcattgtcgtgtgttgatttcag

Basic information

species Glycine max
transcript GLYMA07G02630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21993658|gb|BQ785186.1|BQ785186
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|213597737|gb|DB964474.1|DB964474
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|151404463|gb|EV274277.1|EV274277
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|213611520|gb|DB960800.1|DB960800
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|192306949|gb|FG999968.1|FG999968
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGAAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|209713520|gb|BW681521.1|BW681521
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|209712903|gb|BW679180.1|BW679180
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|9259966|gb|BE348113.1|BE348113
EST:     TAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: TAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|21993790|gb|BQ785318.1|BQ785318
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
EST: gi|192296121|gb|FG989481.1|FG989481
EST:     CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCC                         AAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG
genomic: CTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatag ... ttgatttcagAAGGAGGTAGAAAGCGAGCTTTTCTCTTTGGGAATGACCAAGTTTAACGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTTGCTTGAATTTTATTGGAAGCCATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCCgtaagtatagaaataaagatcgaataatattatatcattcttcttgcgagcactccctgaagctcttacgggaaatgctttcattcagaacatatatagtttgatatgggagttattcattcattgtcgtgtgttgatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT