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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGGTCCAAATGCCTGGAATGAAGgtatcctagtaactctttcctttggttgaccaattaattatttcctcttcatttatttcatagggataaaccataaaccgaatggtaaaggaattgtaaa...

Basic information

species Glycine max
transcript GLYMA07G01940.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01940.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 4
-----------------------------------------------------------------AGTGGGTCCAAATGCCTGGAATGAAGgtatcct--agtaactctttcctttggttg--accaattaattatttcctc--ttcatttatttcatagggataaaccataa--accgaatggtaaaggaattgtaaa
                                                                 ||||||||||||||||||||||||||||||| |  |||| || | |  |     |   | | |||||||||||      || |||  ||| |||  |  |||    ||  |   |||  | || |         
GCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGgtatctttcagtacctttattttacatatattatctattaattatttaaataattaattatttttatattggcaaaatggaataatttaatactcaatgc--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425461|gb|FK386522.1|FK386522
EST:     AGTGGGTCCAAATGCCTTGGAATGAAG                         CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGT
genomic: AGTGGGTCCAAATGCC-TGGAATGAAGgtatcctagt ... atgtgcacagCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGT
EST: gi|193334481|gb|FK301729.1|FK301729
EST:     AGTGGGTCCAAATGCCTGGAATGAAG                         CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGT
genomic: AGTGGGTCCAAATGCCTGGAATGAAGgtatcctagt ... atgtgcacagCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGT