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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTCGATGTCGATAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcatttggtgtcacgtctttgggtttttcttttttcagtagataaaacttggttgcaatttgtcgcatgttctcagtattgttcttcaatcaaaat...

Basic information

species Glycine max
transcript GLYMA07G01430.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01430.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
CATTGTCGATGTCGATAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcatttggtgtcacgtctttgggtttttcttttttcagtagat--aaaacttggttgcaat--ttgtcgcatgttc-tcagtattgttcttcaatcaaaat--------------------
 ||  ||||||| || || || || |||||| | || ||| | |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||  |  |||| |    | ||| |   | ||   | |||| ||   |  |   ||| ||| |  |  |      |||||| |||||  |     | ||||   ||                    
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgtttgt-tttgttcatccatctctaactcttctctgtttcggtttctctagggctttgttacgttggtctatatatgttcatcagtcataacactaaatccttatttggttttatttcaaaacag

upper sequence: GLYMA07G01430.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G73010.1 (Arabidopsis thaliana), 5'ss of exon 1
CATTGTCGATGTCGATAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcatttggtgtcacgtctttgggtttttcttttttcagtagataaaacttggttgcaatttgtcgcatgttctcagt-attgttcttcaatcaaaat---------------------------------------------------------------------------
|||  |||| || ||||| || || ||||| ||||| ||| | || ||||| ||||||||||| || ||||| |||||||||||||||||| | ||||||||  |  | |    ||   |||      ||||||  |||   |    |||  | |  |    |||      |||  ||  | ||| |  | ||||   |||                                                                           
CATCATCGACGTTGATAGCGATAATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATGgtttgt-tctaccttcttctctcatctgttttctcattttccttttgaaatttcgaataacttttcggttttgtattcgattattatcttgcaatttcaatcctttataaaagcttttgttatcttgcaattttgttatcgaataaaaccctaaatggaattgtataaaataacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298518|gb|FG989209.1|FG989209
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209703638|gb|BW678299.1|BW678299
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|151399273|gb|EV269144.1|EV269144
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209715118|gb|BW677161.1|BW677161
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209713878|gb|BW684072.1|BW684072
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|192305151|gb|FG993931.1|FG993931
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|151409022|gb|EV278830.1|EV278830
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|20813370|gb|BQ297848.1|BQ297848
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|192303347|gb|FG997419.1|FG997419
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|19938088|gb|BQ081554.1|BQ081554
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|209699564|gb|BW683030.1|BW683030
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|213611441|gb|DB972786.1|DB972786
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagcattt ... ggatttatagGACAGGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT