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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagcatttggtgtcttgtcacatgttctgttttttcaataccatggttctcaaaagtcctttttatatttcaaatataactttgcatactgcattgtcttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatag

Basic information

species Glycine max
transcript GLYMA07G01410.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01410.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
CATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagcatttggtgtcttgtcacatgttctgttttttcaataccatggttctcaaaagtcctttttatatttcaaatataactttgcatactgcattgtcttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatag
 ||  ||||||| ||||| || || |||||| | || ||| | |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||         ||| | | ||    |||  |||   | |||  |     ||||     | | | || |||  ||     ||||  | | |||    |||     || |  | |   |   ||        |                           
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgt---------ttgttttgttcatccat-ctctaactcttctctgtttcggtttctctagggctttgttacgttg-gtctatatatgttcatcagtcataacactaaatccttatttggttttatttcaaaacag-----------------------

upper sequence: GLYMA07G01410.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G73010.1 (Arabidopsis thaliana), 5'ss of exon 1
CATTGTCGATGTCGACAGTGACAACTGGGTCATCGACGAATTGGGTTTCACCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagcatttggtgtcttgtcacatgttctgttttttcaataccatggttctcaaaagtccttt--ttatat-ttcaaatataactttgcatactgcattgtcttataggcatgaataacttagccgaggattttgtgtttcggttttggatttatag--------------------
|||  |||| || || || || || ||||| ||||| ||| | || ||||| ||||||||||| || ||||| |||||||||||||||||| | ||||||||  |    |  |  | |  | |||  |||| | |  |||   |       ||   || |    ||   || | | ||| | ||| |  ||||| | | || |   |||||   | |  |   ||| |     ||||||| | |||  |       || |                     
CATCATCGACGTTGATAGCGATAATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACACTCATGgtttgttctacct--tcttctctcatctgttttctcattttccttttgaaatttcgaataacttttcggttttgtattcgattattatcttgca-atttcaatcctttataa--aagcttttgttatcttgcaattttgt-tatcgaataaaaccctaaatggaattgtataaaataacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811582|gb|BQ296060.1|BQ296060
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagca ... ggatttatagGACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
EST: gi|151399745|gb|EV269616.1|EV269616
EST:     CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATG                         GACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT
genomic: CCGATTTGTTCAACCAGCTTCTTCCCACCATGCCTTGGAACTCTCTCATGgtaagaagca ... ggatttatagGACAAGATGATGATGGAGCTTCATTCAAATGGTAAAACCATTGAGGACATT