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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACAGATCTTCCAAACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctctttctctctccctctctctgaaaaatcttcatctcaaacttcttatcttatgttatgtgcacacaaatcgcaattcaatggccttagctaa...

Basic information

species Glycine max
transcript GLYMA07G01000.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724704|gb|AW309037.1|AW309037
EST:     AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|193714222|gb|FK655446.1|FK655446
EST:     AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|22523422|gb|BU082233.1|BU082233
EST:     GCAAACAACTTCTTCTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: GCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|38192954|gb|CF922160.1|CF922160
EST:     AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: AACTTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
EST: gi|13312601|gb|BG406252.1|BG406252
EST:     TTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAA                         GGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG
genomic: TTCAGAGCGCAGGCAAACAACTTCTTCTCTCAGACATGGCATCTCAAgtaagcctct ... atgcctgtagGGTTTGTGTCCTTCGATAAAAAATATTCTTCTTTTGGACTCTGAAGGGAAG