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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGATGTGCGTTGGAATGTGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagttttttgcgttggattgttctctatttcatttcaattcacaaggaccctcatatgccactgttggttttgtaggcctgtttgcttattgtcttt...

Basic information

species Glycine max
transcript GLYMA07G00820.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00820.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g08560.2 (Oryza sativa), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGATGTGCGTTGGAATGTGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagtt----ttttgcgttggattgttctctatttcatttcaattcacaaggaccctcatatgccactgttggttttgtaggcctgtttgcttattgtcttt
 || || ||| ||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| || |||||||| || || ||||| ||||| |||||||||         |||  |  ||     ||||||  ||    |   | |||||  ||  | |||    | | ||| |  |  | ||||       | |  |    
AGAACCAAGGAGGACAATGAATGCGAGTGAATGTGTTGCCAGGGGATGTGCGCTGGAGTGTGCTATCCTTAGTCCCACTTTTAAAGTGCGAGAGTTTCAGgtatgtgcccgctttcaccctgctgccttctctgctttggctatctgcacaat-acattaataga--aatcttgctgcttcatgccttaaaatctctaattaa-

upper sequence: GLYMA07G00820.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G79920.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGATGTGCGTTGGAATGTGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagttt-----tttgcgttggattgt---tctctatttcatttcaatt--------cacaaggaccctcatatgcca--ctgttggttttgtaggcctgt---ttgcttattgtcttt----
|||||| ||||| ||||||||||| |||||||||||  | ||||||||||| ||| | ||||| ||||| ||||| || || ||||| || ||||| |||||||  | |     | |  | |  | |     ||  ||||| | |  | ||        | | || ||  | |||  |||   | |  |  | ||     | |   ||  || ||||  |     
GGAGCCCAGGCGTACAATGAATGCAAGTGAGTGTGTGTCGAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaatttgtgcatatctatgcttaagtaaatgtcgttattttaatgtacttgtaagcaactcgagaactgttatactccaggttatctgactagtcatattatgatttattttttgttctcttag

upper sequence: GLYMA07G00820.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G79930.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGATGTGCGTTGGAATGTGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaa--agt---tttttgcgttggattgt---tctctatttcatttcaatt--------cacaaggaccctcatatgcca--ctgttggttttgtaggcctgt---ttgcttattgtcttt----
|||||| ||||||||||||||||| |||||||||||  | ||||||||||| ||| | ||||| ||||| ||||| || || ||||| || ||||| |||||||   ||   | | | || |  | |     ||  |||||   |  | ||        | | || ||  | |||  | |   | |  |  | ||     |||   ||  || ||||  |     
GGAGCCCAGGCGGACAATGAATGCAAGTGAGTGTGTGTCAAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaattggtgcatatctacgcttaagtaaatgtcgttattttcatgtacttgtaagcaactcgagaacttttatactctagattatctgactagtcatattgtgatttattttttgttctcttag

upper sequence: GLYMA07G00820.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 1
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGATGTGCGTTGGAATGTGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagttttttgcg--ttggattgttctctatttcatttcaattcacaaggaccctcatatgccactgttggttttgtaggcctgtttgcttat-tgtcttt----
||| |||||||||||||||||||| ||||||||||| || | ||| |||||  |  |||||||||||||||| ||||| || ||||| ||||| |||||||||||  |  || |   || | ||||    |||||  |||  ||| |   | |     |||||    ||||| |||| || | || ||   |||  | || ||    
GGAACCTAGGCGGACAATGAATGCAAGTGAGTGTGTGGCCAAGGGCTGTGCTCTACAATGTGCAATTCTTAGCCCAACATTTAAAGTGCGAGAGTTTCAGgtaaaactcctttcaacttaggttgtatcttattttcttt--atttatt-gaagtgaaatatg----tgttgcttttttacggctattgagttaaatttccttggtt