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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTTTCCGGCGTCATTCCGATAATTCGGCGGCATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatctccttcgcaattcagcgagctctgtctctcttttccgttttccctatcactcgttgctttctcagttatagtaaaatatctgtacgtttg...

Basic information

species Glycine max
transcript GLYMA07G00490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00490.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 1
-GCCGTTTCCGGCGTCATTCCGATAATTCGGCGGCATGAAGCTCACAGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatctccttcgcaattcagcgagctctgtctctcttttccgttttccctatcactcgttgctttctcagttatagta-aaatatctgtacgtttg--
  ||  ||    | ||    |   |  ||   | |||||||||||| || ||||| ||||| || |||||||| || || |||||||| |||||||| || |||| |    ||   | |  ||        |   |   | |||   ||||| |  | ||  |       |    |||    |    || ||     |  ||  
TCCCAGTTTTTCCTTCTGCTCCTCAGCTCC-TGCCATGAAGCTCACTGTCAAGACCTTGAAGGGAAGCCATTTTGAGATTAGGGTTCAGCCCTCCGATACGgtcactctcttctccccccttttttt---ttaaatacatttttctggtttttctcagcatccaaacggatgctggttgggctttggatgtcatggggcgtgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827362|gb|BE211092.1|BE211092
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|298188098|gb|HO032055.1|HO032055
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTCCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|213614987|gb|DB957039.1|DB957039
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|298164323|gb|HO013968.1|HO013968
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|213592873|gb|DB969839.1|DB969839
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|298167381|gb|HO012644.1|HO012644
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|27427422|gb|CA938942.1|CA938942
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|23727295|gb|BU761676.1|BU761676
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|13125598|gb|BG316168.1|BG316168
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|298172529|gb|HO019569.1|HO019569
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|33387852|gb|CA851059.1|CA851059
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|15200810|gb|BI424534.1|BI424534
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|15338030|gb|BI498686.1|BI498686
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
EST: gi|298164600|gb|HO014245.1|HO014245
EST:     AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACT                         GTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC
genomic: AGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAACCCTCCGACACTgtcagtaatc ... gtcacctcagGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAGATAATTAC