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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTATTCTCTCAACATCCACGAGCATCAGCTCCTTCTTCGCCAAAAGACTCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccgctaaccctaaccctaaccctcttttcttcttttcaattccttacttctcttctatttcgatgacag

Basic information

species Glycine max
transcript GLYMA07G00420.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 1
TACTATTCTCTCAACATCCACGAGCATCAGCTCCTTCTTCGCCAAAAGACTCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtacc-------ctccgctaa---ccctaaccctaa----------ccctcttttcttc---ttttcaattccttacttctcttctatttcgatgacag-
|||||    |   ||||||| || |  |||||||   | || || ||||| |||||||||||||| |||||||| ||| | ||||||||||| ||  | |||  |       |||   |||   ||| |||||||           ||||     |  |   ||||   ||  | | | |||    |  | ||||  |  
TACTACCTGCAGCACATCCATGACCTGCAGCTCCAGATCCGGCAGAAGACCCATAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacatttcttctcgattaagcccccaaaccctagaatcgatgtgcccttcccgcgccgcgttttggcttggtgaatcctcgatcacgttgatggaaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401363|gb|BM178145.1|BM178145
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|213594416|gb|DB970010.1|DB970010
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|15285225|gb|BI469116.1|BI469116
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCTTTTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|37996482|gb|CF808071.1|CF808071
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|37997640|gb|CF809229.1|CF809229
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|19269340|gb|BM885596.1|BM885596
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|5509172|gb|AI855730.1|AI855730
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|6912974|gb|AW394562.1|AW394562
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|151403300|gb|EV273110.1|EV273110
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|213617885|gb|DB957366.1|DB957366
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|298197166|gb|HO041909.1|HO041909
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|213599336|gb|DB972278.1|DB972278
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|298180890|gb|HO022329.1|HO022329
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|7588108|gb|AW703911.1|AW703911
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|37997219|gb|CF808808.1|CF808808
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|16281256|gb|BI944393.1|BI944393
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|7458604|gb|AW666054.1|AW666054
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|213587656|gb|DB971379.1|DB971379
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|213618287|gb|DB973057.1|DB973057
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|120534038|gb|EH262171.1|EH262171
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|24205256|gb|BU964509.1|BU964509
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|18039807|gb|BM308101.1|BM308101
EST:     CTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: CTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|7478542|gb|AW666307.1|AW666307
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|18041169|gb|BM309454.1|BM309454
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|37995944|gb|CF807533.1|CF807533
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|19052933|gb|BM731600.1|BM731600
EST:     TCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
EST: gi|37995965|gb|CF807554.1|CF807554
EST:     TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG
genomic: TCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGACCTCAATTCTAGGGgtaccctccg ... tcgatgacagTGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATG