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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCCAGAGGAACGGGCCCAGGTTGAAGCAGCTCGTCAGCATTTCTACCACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacgttacctatctatttcccaacttaatttaattactctctcttctattcttatttgccctacgcgtag

Basic information

species Glycine max
transcript GLYMA07G00330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614592|gb|DB969141.1|DB969141
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|209727472|gb|BW663733.1|BW663733
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|209699718|gb|BW652090.1|BW652090
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|33390028|gb|CA853235.1|CA853235
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|33388879|gb|CA852086.1|CA852086
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|207755655|gb|GD728906.1|GD728906
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCC
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCC
EST: gi|209707634|gb|BW683427.1|BW683427
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|209724227|gb|BW666592.1|BW666592
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|208192717|gb|GD987570.1|GD987570
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
EST: gi|207733520|gb|GD709552.1|GD709552
EST:     ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAG                         GTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA
genomic: ACAACCGCTTCAAGGTCAAGCCCTGCGCTGACCTCCTTTGGCGTTTTCAGgtaccctacg ... ctacgcgtagGTTCTCAGAGAAAATAACTTCAAACAAACAATTCCTCGTGTGACTATAGAA