1 5' 3' | 2 5' 3' | 3 5' 3' |
AAGAAGAGAAAGAGAACGCTGCAAAGCCGAAGCAGAGTTTCAATTCAATTCAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagttccatcgtcttcttccgcttctttcttcttctattttccttttcatttcattacgaggaaaacaaatacgagtttttatttatttattgt...
species | Glycine max |
transcript | GLYMA06G47800.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAG TCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACAEST: gi|298164806|gb|HO010803.1|HO010803
genomic: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAG TCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACAEST: gi|151406813|gb|EV276628.1|EV276628
genomic: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAG TCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACAEST: gi|208263756|gb|GE062924.1|GE062924
genomic: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAG TCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACAEST: gi|193420878|gb|FK387049.1|FK387049
genomic: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAG TCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACAEST: gi|298176121|gb|HO015526.1|HO015526
genomic: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAG TCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACAEST: gi|192298211|gb|FG991701.1|FG991701
genomic: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
EST: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAG TCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
genomic: CAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagt ... ttgttgacagTCAGTATCAGATGGATCACTTTGCAGCACATGAAGAGCAACTTGCTTCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAGAGAAAGAGAACGCTGCAAAGCCGAAGCAGAGTTTCAATTCAATTCAATAGCGATTTAGAGTTTCCGAAAAGAAATTGATTTCACGCATTTTTAGgtttgtgagttccatcgtcttcttccgcttctttcttcttctattttccttttcatttcattacgaggaaaacaaatacgagtttttatttatttattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaca