1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCAAAGACGAAGGAAGAAGGGAACAACAAAGTGCCACCTGCAACGACGTCGTTCTTTGCAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCTgtaatattttcatcctttttaattcttgaaattaaagaaaaagggtatttttatctgttgaaaaaattgaatcttgattttgattcaatgttcccagttg...
species | Glycine max |
transcript | GLYMA06G47010.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCT GTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTCEST: gi|209703747|gb|BW656880.1|BW656880
genomic: CAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCTgtaatatttt ... gctttggcagGTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTC
EST: GTTCTTTGCAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCT GTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTCEST: gi|298170576|gb|HO019200.1|HO019200
genomic: GTTCTTTGCAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCTgtaatatttt ... gctttggcagGTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTC
EST: GTTCTTTGCAACTTCCGGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCT GTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTCEST: gi|192323561|gb|FK015327.1|FK015327
genomic: GTTCTTTGCAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCTgtaatatttt ... gctttggcagGTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTC
EST: GTTCTTTGCAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCT GTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTC
genomic: GTTCTTTGCAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCTgtaatatttt ... gctttggcagGTTCTTGTTCTTGATGAATATGACACCAGTATGCCCCTTTGTCAAAGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGACGAAGGAAGAAGGGAACAACAAAGTGCCACCTGCAACGACGTCGTTCTTTGCAACTTCCAGTTTCTTCTCTCTGTCTCGTTTACCTCGATCCTgtaatattttcatcctttttaattcttgaaattaaagaaaaagggtatttttatctgttgaaaaaattgaatcttgattttgattcaatgttcccagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaaa