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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCACCGAAGCAGAACCCTAAAATTTTGCTTCAGCGATGCAGCACGACGAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccctcacttcttcaattttcactttctttacttcctcctcagatttatgatttttttttcttttgtag

Basic information

species Glycine max
transcript GLYMA06G43930.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43930.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G23280.1 (Arabidopsis thaliana), 5'ss of exon 1
CCGCCACCGAAGCAGAACCCTAAAATTTTGCTTC-AGCGATGCAGCACGACGAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtac-------cctcactt------cttcaattttcactttc--tttacttcctcctcagatttat---gatttttttttcttttgtag
 |   |||        |   | ||  ||  |    |  |||||| ||||| ||||| |||||||| || || |||||||| || || ||||||||||||||||| |||        ||||||||       ||||||||||| ||     | | ||  |     | ||| |   | | | |||| ||||| |||
-CTAAACCCTTTAGCTATTTTCAAGCTTCACCGGGAAAGATGCAACACGATGAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACATGGCCAAgtatgtattttttatcctcacttgttagctttcaattttcatttgtagctcaatttgttgatgggtttgttttgttctcttttgcttttctag

upper sequence: GLYMA06G43930.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g09220.t01 (Vitis vinifera), 5'ss of exon 2
-CCGCCACCGAAGCAGAACCCTAAAATTTTGCTTCAGCGATGCAGCACGACGAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaag--taccctcacttcttcaattttcactttctttacttcctcctcagatttat-gatttttttt--tcttttgtag--------------
    | | | |      |  ||  |||   | |  |  |||||| |||||||| || |||||||| || |||||||||||||| ||||||| |||| ||||||||   |   ||  |||| |    |||   | |  |||  |  || |    |   | ||||   | |  | |||| | |              
TATACAAACCAGAGTTTATTCTGGAATAGAGGTG-AAAGATGCAACACGACGAAGTGATATGGCAGGTCATCAGGCACAACCACTGCAGTTTCATGACCAAgtaaacttgatcttccttcgtaccctttgtttctgattatattttctttgagtcagttgattcaatgtggtattttttcggtgttgtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345742|gb|GR859389.1|GR859389
EST:     GGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|21889376|gb|BQ742589.1|BQ742589
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|18690832|gb|BM519680.1|BM519680
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|6502229|gb|AW203602.1|AW203602
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|298185435|gb|HO030648.1|HO030648
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagtaccc ... tcttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG