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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGgtccctgccctaatttcaattcttttcaccctctccgcttcgttttcaatcgaatcggatcttctttgagaatccggaaagcactaatgaatgcttcaatttttcag

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 5'ss of exon 1
GGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGgtccctgccctaatttcaattcttttcaccctctccgcttcgttttcaatcgaatcggatcttctttgagaatccggaaagcactaatgaatgcttcaatttttcag
|||||| ||||| || ||||||||||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||  | ||||||||      || |  ||| |    |  | | | |  ||       |     |  |   ||  ||   ||   || | |       || ||  ||| |||  |      
GGACCGGCTCCTGCGGCAGTGCGGCGCCGACATCCCACACGAGCGCGCCATGGACTCCATCAGCCTCGAGCGCGAGCGCGGCATCACCATTGCCTCCAAGgt----aacccaccttccaccactcgcgcgcgccgcgtggttagtgagggcacacgagaggttaaatgtccattccgtcgaacatactgcgtgcatcacgtgag---

upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G128688_T02 (Zea mays), 5'ss of exon 1
GGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGgtccctgccctaatttcaattcttttcaccctctccgcttcgttttcaatcgaatcggatcttctttgagaatccggaaagcactaatgaatgcttcaatttttcag
|||||| ||||| || |||||||| |||||  |||||||||||||||||||||| || |||   || ||||||||||||||||| |||||  | ||||||||   |  |  |  |   |    |    |   |   || | || ||||||    | |       |  | | |||   | || ||| ||     | | |     |   
GGACCGGCTCCTTCGACAGTGCGGGGCCGATATCCCCCACGAGCGCGCCATGGATTCAATCAGCCTTGAGCGCGAGCGCGGCATTACCATTGCCTCCAAGgtaggtaacacatctcgcaggactcgtgcttgcat-gcgtggtcttcaatttcgttgagcaagttgcgtgcatc---acagtactgatcttaacataatccgct---

upper sequence: GLYMA06G43820.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 1
GGACCGCCTCCTCCGCCAGTGCGGCGCCGACCTCCCCCACGAGCGCGCCATGGACTCCATCTCGCTCGAGCGCGAGCGCGGCATCACCATCTCTTCCAAGgtccctgccctaatttcaattcttttcaccctctccgcttcgttttcaatcgaatcggatcttctttgagaatccggaaagcactaatgaatgcttcaatttttcag
|||||| |||||||| ||||| ||||||||| ||||||||||||||||| | |||||||||   ||||||||||||||||||||||||||  |||||||||||| |   || | |  ||   |    | |||  |   || |||| | |  ||||  |              |  ||||||   | |    || || | ||||    
GGACCGGCTCCTCCGGCAGTGTGGCGCCGACATCCCCCACGAGCGCGCCCTCGACTCCATCAGTCTCGAGCGCGAGCGCGGCATCACCATTGCTTCCAAGgtcc-tattctcact--aaccataaaaatccttcct--ttggtttccgaaagaatttgggaaaagaaagagttttggaaagttatgaaatttgatttagttttgt--