1 5' 3' | 2 5' 3' | 3 5' 3' |
GTCCTCCGCAAGAAGGCTCCCACTGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttcccaaaaccctcaccgattgatcaatttattgtcttttcttcttttgtttttaaatataggatctgaacttcttgtttcttgggattattgca...
species | Glycine max |
transcript | GLYMA06G42900.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|120492194|gb|EH220361.1|EH220361
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|192316373|gb|FK008162.1|FK008162
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|192302097|gb|FG993467.1|FG993467
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCACCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|192329167|gb|FK019754.1|FK019754
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|192302223|gb|FG996617.1|FG996617
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|18735226|gb|BM528641.1|BM528641
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCT-AAAAAAT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|192315428|gb|FK007774.1|FK007774
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|21888229|gb|BQ741433.1|BQ741433
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCT--NNNNNN NTAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|7638872|gb|AW733264.1|AW733264
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|10231268|gb|BE800165.1|BE800165
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|7638873|gb|AW733265.1|AW733265
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|192316374|gb|FK008163.1|FK008163
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAEST: gi|17023513|gb|BM094547.1|BM094547
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
EST: GTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTEST: gi|254339962|gb|GR858087.1|GR858087
genomic: GTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCT-AAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACT
EST: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTNNNNNNNT ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttccc ... gttgttacagATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTCCGCAAGAAGGCTCCCACTGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATgttccttcccaaaaccctcaccgattgatcaatttattgtcttttcttcttttgtttttaaatataggatctgaacttcttgtttcttgggattattgca
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