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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccctaaaccctcattcaaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa...

Basic information

species Glycine max
transcript GLYMA06G42890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 1
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgt--tccctaaaccctcattcaaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa
||  | || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||| | || |||||| |||  | |     ||| ||  |      |   |  |  |     ||       ||     |  | | |   ||   ||  |   |   | ||||| |  
GTGGTGCGGAAGAAGGCGCCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAGATCGAGACCATGAAGAAGTgtgcgtactactgcctcccccaccccctcctacccttttcttttgatttgattcgattcgcttttccctctccttttctttgaatcgaaggggttctttt--

upper sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G101480_T01 (Zea mays), 5'ss of exon 1
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgt--tccctaaaccctcattcaaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa-----
||  | || |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||| || ||||| ||| | || ||||||  ||  | | ||        ||       ||  |||   |  || |  ||    || |   | | || | |||| || | || ||   ||      |        
GTTGTGCGGAAGAAGGCACCCACCGCCGCTGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggttcgtaggtttcggtt----ggtatcttaac--tcgatttgggatcctttttcttttgggtttcgatt-tcatccattttgcagcccagccggctgtgc

upper sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G800112_T01 (Zea mays), 5'ss of exon 1
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgt---tcgttccctaaaccctcattcaaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa
||  | || |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| | || || || ||||| ||| | || ||||||   | ||| | || |   |  ||   |       |||    |  |    |     || |   ||| || | ||||  | | |  ||   ||      |   
GTTGTGCGGAAGAAGGCACCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCGCCGGTGCGGAGATCGATACCATGAAGAAGTgtaagtggtttcatagattttggttgctaccccccctaactcgattttggaggtcttttatctttcgggtttcgatt--catccgttttgcagcacagccgg-

upper sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0014g01260.t01 (Vitis vinifera), 5'ss of exon 1
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccctaaaccctcattcaaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgt--tgattgtcttacaattataagtttcttctaa
||  |||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||   |||||||| ||||| ||  | || ||||||     || |   |  || |||   |   |  |         | |||||| |  | || |  | ||    |||   ||  | |||  |   | | |||   
GTGATCCGGAAGAAGCCTCTCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgtattcccctttctctttctttccccattttttttcgttgtttttttcgaagaaatctttggagggtagaatgagaatcgaaaaatattttttattttcc--

upper sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 1
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccctaaaccctcatt------caaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa
||  |||| |||||| |||  | ||| ||||||||||||||||||||||| |||||||| || || |||   |||||||| ||||||||||| | ||| |||  |     |   |   | ||             ||  |    ||   | ||   | |   || | || | ||   ||| ||    |   | |||     |    
GTGATCCGGAAGAAGCCTCTGAACGCTGCCGCCAAGAAGGACGAGAAAGCTGTCAACGCTGCTCGTCGCAGCGGCGCCGAGATCGAAACCCTTAGAAAATgtaagcctttttgtcttgctttgttttctttccccatgtttcctgtttgtttttcgagaaa-gtacttcccttgaaaattatccctgag--aaaagccgagtt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396561|gb|AI495558.1|AI495558
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|31310925|gb|CD396128.1|CD396128
EST:     CGTGAACGCCGCCCGCCGCTCTGGCGCCGAAATCGTAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGTATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|23725189|gb|BU760542.1|BU760542
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|15337233|gb|BI497889.1|BI497889
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|213616979|gb|DB959291.1|DB959291
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|19053935|gb|BM732602.1|BM732602
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|21995101|gb|BQ786629.1|BQ786629
EST:     CGGCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|27425956|gb|CA937476.1|CA937476
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|208222819|gb|GE021236.1|GE021236
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         AATAATGCTGGGAACAAAACAAAAGCAGCAT
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagA-TAATGCTGGGA-CAAA-CAAA-GCAGCAT
EST: gi|10235158|gb|BE804046.1|BE804046
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|151396521|gb|EV266398.1|EV266398
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|9901341|gb|BE610309.1|BE610309
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|254315485|gb|GR825294.1|GR825294
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|254336035|gb|GR841360.1|GR841360
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|6725980|gb|AW310379.1|AW310379
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|209728958|gb|BW651735.1|BW651735
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|5509723|gb|AI856281.1|AI856281
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|193685767|gb|FK626281.1|FK626281
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCG-AACCCTAAAAAAGT                         ATAATGCTGGG-CAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|10710695|gb|BF010413.1|BF010413
EST:     GTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCCTAAAAA-GT                         TTAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACT
genomic: GTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCC-TAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACT
EST: gi|9563865|gb|BE473374.1|BE473374
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|298198593|gb|HO040132.1|HO040132
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGGAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|18040187|gb|BM308481.1|BM308481
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|254326261|gb|GR840853.1|GR840853
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|22540875|gb|BU090718.1|BU090718
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|209728957|gb|BW651734.1|BW651734
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|193559905|gb|FK520528.1|FK520528
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCG-AACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAAGCGGCACTTCATTGAACACT
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCT-AGCGGCACTTCATTGAACACT
EST: gi|7232928|gb|AW568279.1|AW568279
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|4395961|gb|AI494958.1|AI494958
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|193566763|gb|FK525606.1|FK525606
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|10710428|gb|BF010119.1|BF010119
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|254326260|gb|GR840852.1|GR840852
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|6502156|gb|AW203529.1|AW203529
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|7640472|gb|AW734773.1|AW734773
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|209701672|gb|BW660991.1|BW660991
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|58015384|gb|CX702126.1|CX702126
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|193556121|gb|FK511428.1|FK511428
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|15199290|gb|BI423756.1|BI423756
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|5509732|gb|AI856290.1|AI856290
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAATAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|10231371|gb|BE800259.1|BE800259
EST:     CCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|7588130|gb|AW703932.1|AW703932
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|5510124|gb|AI856508.1|AI856508
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|213617330|gb|DB965201.1|DB965201
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|298167194|gb|HO010633.1|HO010633
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|213600956|gb|DB958450.1|DB958450
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|7796869|gb|AW782263.1|AW782263
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|10709862|gb|BF009586.1|BF009586
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|7041774|gb|AW471668.1|AW471668
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATATTGCTGTGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|254336034|gb|GR841359.1|GR841359
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|5510113|gb|AI856497.1|AI856497
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|298172601|gb|HO019641.1|HO019641
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|192324005|gb|FK019296.1|FK019296
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|21995227|gb|BQ786755.1|BQ786755
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|254315484|gb|GR825293.1|GR825293
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|58015691|gb|CX702433.1|CX702433
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
EST: gi|209697662|gb|BW660990.1|BW660990
EST:     CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGT                         ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA
genomic: CGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccc ... attgttacagATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCTCTGGCGCCGAAATCGAAACCCTAAAAAAGTgttcgttccctaaaccctcattcaaaaaaatagtaatagtaaatcttcgaatagttgttcgtcgcgtgttgattgtcttacaattataagtttcttctaa

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