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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag

Basic information

species Glycine max
transcript GLYMA06G36190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag
|||| || |  ||||||||||| || || ||||||||| | |  || || |||||||| || ||||||||||| |||||||||||||| ||||||||||||||||  | | |    |   |   ||       |  |||||   |  | | |  ||     | | ||     |  | | || | |  |  |   | |  || |                
AAGAGGCCGCCGGGATGATGGCTCTCCACGAGGCCCTCCGCAACGTCTGCCTCAACTCCGACTGGACTTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatg--tgtaccacttaattaattaccacccctcctatga-atttttgcctcaaac----tctcat----ctcatctcttctccctatatatatgtcgtcgaag--------------

upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag
|||| || |  ||||||||||| || || ||||||||| | |  || || ||| |||| || ||||| ||||| |||||||||||||| ||||||||||||||||   |   | |  ||| |||  | || |    | |    | ||| || |||       || |    |||  ||   ||    ||| ||                           
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagctaagct-ctctcagcttcacttca----gttagttaccttggtgcacatgcag------------------------

upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggt--gttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag-------------------------------------------------------------------------------
|||| || |  ||||||||||| || || ||||||||| | |  || || |||| ||| || ||||| ||||| |||||||||||||| ||||||||||||||||     | |  ||||| ||||  ||  |  ||   ||    |     |  | | ||  ||  ||  |    |   | || |  |  |     |  ||| | | ||||| |   || |                                                                               
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCAGCTCGGACTGGACGTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgatgtgtgcctctccctgtccttattccgtccggacaccgacgaatgaactcgtccgtcctactatagctagctattgtctttgctc---ttctctgcttgttattatgccgccgtctaagcccacaacacaagccccagtttgtcatcacaggcacagcgagtgatgactgtgtactatttccctgcatgcag

upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttat-gatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag
|||| ||||| || |||||||| |||||||| || || ||||| || ||| | ||||| || |||| ||||||||||||||||||||||||||| || |||||  |  ||||||||||||||| | | |      | ||  ||  | ||   ||   |    |||| |  | |    ||| |  | |||                               
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgtacaca-cttctctctctctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag------------------------------

upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctct-ctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag
|||||||| | |||||| |||| || || || ||||| |||| ||| ||||||||| | || ||||||||||||||||||||| |||| ||||| || ||||| |  |||     |||  |||     ||| | | ||||    ||| |   |  |    |  |  |   | | | |||||| ||||                                 
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcctcagctcctctcttttttttttattgacatgatctatctatctctcctcaaaacgatgtcttttttgttcttcag-----------------------------

upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||     |||| || |||     |||| |||  |||          || ||  || | ||||  |   ||  |  | ||||||||   |||| |  ||||||||       |||||
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatg-----tctccctttctacactttttctat-ctat----------ctgtctgtgatttttt--ggttttcctgatattttctcaaacgggtatcttccatttt-------tgcag

upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ05904 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatg--------cttcttctctctctctctgtattttg---tatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag
  ||||   | |   | ||||| || || || || ||  | | ||||||| ||| ||||||||||||||||||||||||||||||||| ||||| || ||||| |        |  |||    | |  ||| | | |     | | |   | |    ||  | ||   | ||||| |     ||  |   ||  |  |  |||  || |||   ||| || | |      
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaagcagctcaccttaagcccccttctctctctcactctctctctcgctctctctcttctcctcgttgtttcactgcattgctacgttgcttgc-tctgattcatctggctttcatctccag----

upper sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag
  ||||   | |   | ||||| || || || || ||  | | ||||||| ||| ||||||||||||||||||||||||||||||||| ||||| || ||||| |   |  ||| | ||         || | | |     |    ||  | ||   | ||||| |     ||  |   ||  |  |  |||  || |||   ||| || | |      
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaggcagctcgc-cttaagcccccttctctctctctctctctctcttctcctcgttgtttcactgcattgctacgttgcttgc-tctgattcatctggctttcatctccag----