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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTACACTAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGTgtgagttgttttttcctttttgaaaaaaaaatgtgttttggtccctcaaattgatgagagaaagttcgattttagtagtgcctatgagaatttaatacag...

Basic information

species Glycine max
transcript GLYMA06G34850.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G34850.2 (Glycine max), 5'ss of exon 1
lower sequence: AT4G22140.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAACTACACTAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGTgtgagttgttttttcctttttgaaaaaaaaatgtg---ttttggtccctcaaattgatgagagaaagttcgattttagtagtgcctatgagaatttaatacag
| |||||||| | |||||| || || || || |||||||| ||||||||||||||||||||||| ||| |||| || ||||||||||| || |||||||||| ||| | |   |  |  |   |  | || |  |   | ||  | |||  ||||  |    ||   ||    | | || |    |    |  | | |     
AAAACTACACGAGGCTTGAAAACGTTGGGGCAGAGGATTATTATTGTAGATTCGAGTACAAGGCTGCTACTGGCGCATTTACCCCTGATCGAGTTGCTGTgtaagtagataaatagtaatcagatcagaactacgccttcttattacctggaatt--tccatgattttttatctgttgtgggttgttgttggttctgaag---

upper sequence: GLYMA06G34850.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 2
AGAACTACACTAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGTgtgagttgttttttcctttttgaaaaaaaaat--gtgttttggtcc-ctcaaattgatgagagaaagttcgattttagtagtgcctatgagaatttaatacag
||||||| ||||||||||| ||||| || |||||||||||||||||| | |||||||| ||||| ||| |||||| ||| || || ||||| |||||||||||||||    ||   ||  || |   |  ||   || ||   |   ||   |||  || |   | |     ||||   | |   |||   |           
AGAACTATACTAAGCTTGAAAATGTTGGGGCTGAGGATTACTATTGTCGGTTCGAGTATAAGGCAGCTACTGGGGGTTTCACGCCGGACCGAGTTGCTGTgtgagtttgagttgttttgctggattgatgattgatgattgaatgtactggtattcgtgggctgatgaatacttttga-attttgtattgaag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193621714|gb|FK568572.1|FK568572
EST:     TTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGT                         GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
genomic: TTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGTgtgagttgtt ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
EST: gi|21595480|gb|BQ610494.1|BQ610494
EST:     TTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGT                         GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA
genomic: TTCGAGTACAAGGCCGCTTCTGGGGCTTTTACCCCTGACCGTGTTGCTGTgtgagttgtt ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCTAAGAAACTAGA