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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATAGTTCAGAATTCAGATCCATTCTTGTCCTATCTTTTTTTTTCTTTTAGATTTTTCTTTAAAATTCTCTATCGACCAAAGATCTTCAACAAACCGgtaaattctctttctctttctccgattcgtttccgagaattttcagattcacagatctgtgttatttctggcttcgttcgatctgcattttccatccgtt...

Basic information

species Glycine max
transcript GLYMA06G32680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329866|gb|GR839419.1|GR839419
EST:     AAAATTCTCTATCGACCAAAGATCTTCAACAAACCG                         GTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC
genomic: AAAATTCTCTATCGACCAAAGATCTTCAACAAACCGgtaaattctc ... tctggtgcagGTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC
EST: gi|254327676|gb|GR834641.1|GR834641
EST:     AAAATTCTCTATCGACCAAAGATCTTCAACAAACCG                         GTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC
genomic: AAAATTCTCTATCGACCAAAGATCTTCAACAAACCGgtaaattctc ... tctggtgcagGTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC
EST: gi|298169818|gb|HO018442.1|HO018442
EST:     TTAGATTTTTCTTTAAAATTCTCTATCGACCAAAGATCTTCAACAAACCG                         GTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC
genomic: TTAGATTTTTCTTTAAAATTCTCTATCGACCAAAGATCTTCAACAAACCGgtaaattctc ... tctggtgcagGTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC
EST: gi|12773090|gb|BG238017.1|BG238017
EST:     TTTCTTTAAAATTCTCTATCGACCAAAGATCTTCAACAAACCG                         G-TAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC
genomic: TTTCTTTAAAATTCTCTATCGACCAAAGATCTTCAACAAACCGgtaaattctc ... tctggtgcagGTTAAGTTTGTGTAGTTTGGTAAGATGGGTGGTGGATTTAGAGTGCTTCAC