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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGATGATGCAGAACCTCTTCGGAGATCAATCCGAGGAGGAGGAAGAGCTCGACGTCGATTCCGAGCACGAATCGAACCCGCAACAAAATTACCCCTCCgtacacccccgattccacgaaccctaaccttttcccttacgcagggtttggatccctaaccatttcctaacaatttgcgtgttttttttttgtaatttatacag

Basic information

species Glycine max
transcript GLYMA06G21900.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G21900.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g07160.t01 (Vitis vinifera), 5'ss of exon 1
---CCAGATGATGCAGAACCTCTTCGGAGATCAATCCGAGGAGGAGGAAGAGCTCGACGTCGATTCCGAGCACGAATCGAACCCGCAACAAAATTACCCCTCCgtacacccccgattccacgaaccctaaccttttcccttacgcagggtttggatccctaaccatttcctaacaatttgcgtgttttttttttgtaatttatacag
   |||||||||||||||||| ||||| |||||||| || ||||| |||||    ||  ||||||| |||||||| || ||||| ||||     |||  ||| || |   | |    || |      | |  | ||   ||    |   ||   ||      |  || | ||||     || |||   |    |   ||  ||   |
ACACCAGATGATGCAGAACCTATTCGGCGATCAATCAGAAGAGGAAGAAGAA---GAGATCGATTCTGAGCACGAGTCCAACCCCCAACCTGGCTACATCTCTgttcgatctc---cccccttgtttttatatatttattttattaattttgaaataaaacgctgttccttaacgtggggc-tgtgactgcactcgtatacatttgg