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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGACTTCGTCTGGAGCGGCCACGCCAGCCCCACGTTCCAGACCATCGTCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaaatgttaattgttagtttgttagagaatactagtgattgcgattcgaaaacactaacaatgtccgttttaagatgagactcataattaataagtacatgaatagttaattatccgtaattgattgttgtgtgtgtgtgtgtgtttgtgcag

Basic information

species Glycine max
transcript GLYMA06G20360.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193680201|gb|FK625325.1|FK625325
EST:     TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|213593761|gb|DB957881.1|DB957881
EST:     TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|207808150|gb|GD780123.1|GD780123
EST:     CCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|193701731|gb|FK639541.1|FK639541
EST:     TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|193499599|gb|FK458384.1|FK458384
EST:     TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|207796148|gb|GD771415.1|GD771415
EST:     TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|213589222|gb|DB957754.1|DB957754
EST:     TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|193525774|gb|FK481181.1|FK481181
EST:     CGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: CGCCCGCATCATGAACAACAACCCCGGCCGCCCCAT-CCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
EST: gi|213614646|gb|DB972858.1|DB972858
EST:     TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAG                         GTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC
genomic: TCGCCCGCATCATGAACAACAACCCCGGCCGCCCCATCCCTCCCTCCAAGgtatcggcaa ... gtttgtgcagGTGAAGTCTTTTAAGGAAAAGAGTGAAGTGGATGCGTGGCTTCTCAGCAAC